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23 #ifndef _IDENTDATA_IO_HPP_
24 #define _IDENTDATA_IO_HPP_
262 SequenceCollectionFlag sequenceCollectionFlag = ReadSequenceCollection,
271 #endif // _IDENTDATA_IO_HPP_
Uncontrolled user parameters (essentially allowing free text). Before using these,...
Implementation of SpectrumIdentificationItemType from the mzIdentML schema.
Implementation of PersonType from the mzIdentML schema.
The XMLWriter class provides simple, tag-level XML syntax writing.
Implementation of PeptideEvidenceType from the mzIdentML schema.
Implementation of ResidueType from the mzIdentML schema.
void filter(const TContainer &data, const TContainer &filter, TContainer &result, bool circular=false, uint32_t sides=2)
Applies linear convolution (filtering) to a univariate time series.
Implementation of AmbiguousResidueType from the mzIdentML schema.
Information about an ontology or CV source and a short 'lookup' tag to refer to.
Implementation of SpectrumIdentificationResultType from the mzIdentML schema.
Implementation of ProteinDetectionHypothesisType from the mzIdentML schema.
Implementation of SpectraDataType from the mzIdentML schema.
Implementation of ProviderType from the mzIdentML schema.
Implementation of SubstitutionModificationType from the mzIdentML schema.
Implementation of TranslationTableType from the mzIdentML schema.
Implementation of SourceFileType from the mzIdentML schema.
Implementation of AbstractOrganizationType from the mzIdentML schema.
Implementation of IonTypeType from the mzIdentML schema.
Implementation of ProteinDetectionType from the mzIdentML schema.
Implementation of EnzymeType from the mzIdentML schema.
PWIZ_API_DECL void write(minimxml::XMLWriter &writer, const CV &cv)
Parent class representing extensions of the IdentifiableType from the mzIdentML schema.
Implementation for the BibliographicReferenceType tag in the mzIdentML schema.
Implementation of PeptideHypothesisType from the mzIdentML schema.
Implementation of ModificationType from the mzIdentML schema.
PWIZ_API_DECL proteome::Peptide peptide(const Peptide &peptide)
creates a proteome::Peptide from an identdata::Peptide
Implementation of DatabaseTranslationType from the mzIdentML schema.
Implementation of ProteinDetectionListType from the mzIdentML schema.
Implementation of FragmentArrayType from the mzIdentML schema.
Implementation of AnalysisProtocolCollectionType from the mzIdentML schema.
Implementation of ProteinDetectionProtocolType from the mzIdentML schema.
Implementation of AnalysisCollectionType from the mzIdentML schema.
Implementation of PeptideType from the mzIdentML schema.
Implementation of SpectrumIdentificationProtocolType from the mzIdentML schema.
Implementation of SearchModificationType from the mzIdentML schema.
Implementation of SequenceCollectionType from the mzIdentML schema.
Implementation of MassTableType from the mzIdentML schema.
Implementation of DataCollectionType from the mzIdentML schema.
handles registration of IterationListeners and broadcast of update messages
Implementation of SearchDatabaseType from the mzIdentML schema.
Implementation of the MzIdentMLType from the mzIdentML schema.
PWIZ_API_DECL const CV & cv(const std::string &prefix)
returns a CV object for the specified namespace (prefix); currently supported namespaces are: MS UO
Implementation of the SampleType from the mzIdentML schema.
Implementation of AnalysisDataType from the mzIdentML schema.
Implementation of MeasureType from the mzIdentML schema.
Implementation of DBSequenceType from the mzIdentML schema.
Implementation of AnalysisSoftwareType from the mzIdentML schema.
Implementation of FilterType from the mzIdentML schema.
Implementation of AnalysisSampleCollectionType from mzIdentML schema.
Implementation of EnzymesType from the mzIdentML schema.
Implementation of SpectrumIdentificationListType from the mzIdentML schema.
Parent class of all Identifiable objects that have ParamGroups.
represents a tag-value pair, where the tag comes from the controlled vocabulary
Implementation of SpectrumIdentificationType from the mzIdentML schema.
PWIZ_API_DECL void read(std::istream &is, CV &cv)
Implementation of ProteinAmbiguityGroupType from the mzIdentML schema.