ProteoWizard
Class Index
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a
DefaultTabHandler
(
pwiz::util
)
Match
(
pwiz::data::pepxml
)
ProteinList_DecoyGenerator
(
pwiz::analysis
)
SpectrumIdentityFromXML
(
pwiz::msdata
)
DelimReader
(
pwiz::identdata
)
MatchData
(
pwiz::data::pepxml
)
ProteinList_DecoyGeneratorPredicate_Reversed
(
pwiz::analysis
)
SpectrumInfo
(
pwiz::msdata
)
Activation
(
pwiz::msdata
)
DelimWriter
(
pwiz::identdata
)
MatrixIO
(
pwiz::analysis
)
ProteinList_DecoyGeneratorPredicate_Shuffled
(
pwiz::analysis
)
SpectrumIterator
(
pwiz::msdata
)
AdaptedErrorDerivative
(
pwiz::frequency::DerivativeTest
)
PrecursorMaskCodec::DemuxBoundary
(
pwiz::analysis
)
MatrixIOTest
ProteinList_Filter
(
pwiz::analysis
)
SpectrumList
(
pwiz::msdata
)
AdaptedErrorFunction
(
pwiz::frequency::DerivativeTest
)
DemuxDebugReader
(
pwiz::analysis
)
meanfunctor
(
ralab::base::resample::utilities
)
ProteinList_FilterPredicate_IdSet
(
pwiz::analysis
)
SpectrumList_3D
(
pwiz::analysis
)
AlternativeProtein
(
pwiz::data::pepxml
)
DemuxDebugRWTest
Measure
(
pwiz::identdata
)
ProteinList_FilterPredicate_IndexSet
(
pwiz::analysis
)
SpectrumList_ABI
(
pwiz::msdata::detail
)
AmbiguousResidue
(
pwiz::identdata
)
DemuxDebugWriter
(
pwiz::analysis
)
MemoryIndex
(
pwiz::data
)
ProteinListCache
(
pwiz::proteome
)
SpectrumList_ABI_T2D
(
pwiz::msdata::detail
)
AminoAcidModification
(
pwiz::data::pepxml
)
DemuxHelpersTest
MemoryMRUCache
(
pwiz::msdata
)
ProteinListFactory
(
pwiz::analysis
)
SpectrumList_Agilent
(
pwiz::msdata::detail
)
AnalysisCollection
(
pwiz::identdata
)
DemuxSolver
(
pwiz::analysis
)
MetadataReporter
(
pwiz::analysis
)
ProteinListSimple
(
pwiz::proteome
)
SpectrumList_Bruker
(
pwiz::msdata::detail
)
AnalysisData
(
pwiz::identdata
)
DemuxSolverTest
Mexican_Hat
(
ralab::base::filter::utilities
)
ProteinListWrapper
(
pwiz::proteome
)
SpectrumList_BTDX
(
pwiz::msdata
)
AnalysisProtocolCollection
(
pwiz::identdata
)
DemuxTest
Mexican_Hat2
(
ralab::base::filter::utilities
)
ProteomeData
(
pwiz::proteome
)
SpectrumList_ChargeFromIsotope
(
pwiz::analysis
)
AnalysisResult
(
pwiz::data::pepxml
)
DemuxWindow
(
pwiz::analysis
)
MixtureModel
(
pwiz::data::pepxml
)
ProteomeDataFile
(
pwiz::proteome
)
SpectrumList_ChargeStateCalculator
(
pwiz::analysis
)
AnalysisSampleCollection
(
pwiz::identdata
)
Diff
(
pwiz::data
)
ModAminoAcidMass
(
pwiz::data::pepxml
)
Provider
(
pwiz::identdata
)
SpectrumList_Demux
(
pwiz::analysis
)
AnalysisSoftware
(
pwiz::identdata
)
DiffConfig
(
pwiz::msdata
)
Modification
(
pwiz::identdata
)
Publication
(
pwiz::tradata
)
SpectrumList_Filter
(
pwiz::analysis
)
AnalysisSummary
(
pwiz::data::pepxml
)
DiffConfig
(
pwiz::proteome
)
Modification
(
pwiz::proteome
)
q
SpectrumList_FilterPredicate_ActivationType
(
pwiz::analysis
)
AnalysisTimestamp
(
pwiz::data::pepxml
)
DiffConfig
(
pwiz::tradata
)
Modification
(
pwiz::tradata
)
SpectrumList_FilterPredicate_AnalyzerType
(
pwiz::analysis
)
analyzer_strings
(
pwiz::analysis
)
DiffConfig
(
pwiz::identdata
)
ModificationInfo
(
pwiz::data::pepxml
)
Q3RatioResult
(
pwiz::data::pepxml
)
SpectrumList_FilterPredicate_ChargeStateSet
(
pwiz::analysis
)
analyzer_strings< MetadataReporter >
(
pwiz::analysis
)
DigestedPeptide
(
pwiz::proteome
)
ModificationList
(
pwiz::proteome
)
r
SpectrumList_FilterPredicate_DefaultArrayLengthSet
(
pwiz::analysis
)
analyzer_strings< RegionSIC >
(
pwiz::analysis
)
DigestedPeptideLessThan
ModificationMap
(
pwiz::proteome
)
SpectrumList_FilterPredicate_IdSet
(
pwiz::analysis
)
analyzer_strings< RegionSlice >
(
pwiz::analysis
)
Digestion
(
pwiz::proteome
)
mru_list
(
pwiz::util
)
random_access_compressed_ifstream
(
pwiz::util
)
SpectrumList_FilterPredicate_IndexSet
(
pwiz::analysis
)
analyzer_strings< RegionTIC >
(
pwiz::analysis
)
DistributionPoint
(
pwiz::data::pepxml
)
MS2Deisotoper
(
pwiz::analysis
)
RawMassDatum
SpectrumList_FilterPredicate_MSLevelSet
(
pwiz::analysis
)
analyzer_strings< RunSummary >
(
pwiz::analysis
)
KernelTraits::Dummy
(
pwiz::math::MatchedFilter
)
MS2NoiseFilter
(
pwiz::analysis
)
Reader
(
pwiz::identdata
)
SpectrumList_FilterPredicate_MzPresent
(
pwiz::analysis
)
analyzer_strings< SpectrumBinaryData >
(
pwiz::analysis
)
e
MSData
(
pwiz::msdata
)
Reader
(
pwiz::msdata
)
SpectrumList_FilterPredicate_Polarity
(
pwiz::analysis
)
analyzer_strings< SpectrumTable >
(
pwiz::analysis
)
MSDataAnalyzer
(
pwiz::analysis
)
Reader
(
pwiz::tradata
)
SpectrumList_FilterPredicate_PrecursorMzSet
(
pwiz::analysis
)
AnotherRootHandler
Element
(
pwiz::chemistry::detail
)
MSDataAnalyzerContainer
(
pwiz::analysis
)
Reader
(
pwiz::proteome
)
SpectrumList_FilterPredicate_ScanEventSet
(
pwiz::analysis
)
Handler::Attributes::attribute
(
pwiz::minimxml::SAXParser
)
Index::Entry
(
pwiz::data
)
MSDataAnalyzerDriver
(
pwiz::analysis
)
Reader1
SpectrumList_FilterPredicate_ScanNumberSet
(
pwiz::analysis
)
Handler::Attributes
(
pwiz::minimxml::SAXParser
)
EnumConstantNotPresentException
MSDataCache
(
pwiz::analysis
)
Reader2
SpectrumList_FilterPredicate_ScanTimeRange
(
pwiz::analysis
)
XMLWriter::Attributes
(
pwiz::minimxml
)
EnzymaticSearchConstraint
(
pwiz::data::pepxml
)
MSDataFile
(
pwiz::msdata
)
Reader_ABI
(
pwiz::msdata
)
SpectrumList_FilterPredicate_ThermoScanFilter
(
pwiz::analysis
)
b
Enzyme
(
pwiz::identdata
)
MSDataMerger
(
pwiz::msdata
)
Reader_ABI_T2D
(
pwiz::msdata
)
SpectrumList_IonMobility
(
pwiz::analysis
)
EnzymePtr_missedCleavages
MSDataWithSettableVersion
Reader_Agilent
(
pwiz::msdata
)
SpectrumList_LockmassRefiner
(
pwiz::analysis
)
BadListener
EnzymePtr_specificity
DemuxTest::MSDPair
Reader_Bruker
(
pwiz::msdata
)
SpectrumList_MetadataFixer
(
pwiz::analysis
)
BaseDiffConfig
(
pwiz::data
)
Enzymes
(
pwiz::identdata
)
MSIHandler
(
pwiz::util
)
Reader_BTDX
(
pwiz::msdata
)
SpectrumList_MGF
(
pwiz::msdata
)
basic_charcounter
(
pwiz::minimxml
)
ParametrizedFunction::ErrorFunction
(
pwiz::frequency
)
MSInspectRecordBuilder
(
pwiz::peptideid
)
Reader_FASTA
(
pwiz::proteome
)
SpectrumList_MSn
(
pwiz::msdata
)
BibliographicReference
(
pwiz::identdata
)
ErrorPoint
(
pwiz::data::pepxml
)
MSLevelSorter
Reader_MGF
(
pwiz::msdata
)
SpectrumList_mzML
(
pwiz::msdata
)
Bin1D
(
ralab::base::resample
)
EvenMS2Predicate
MSMSPipelineAnalysis
(
pwiz::data::pepxml
)
Reader_MSn
(
pwiz::msdata
)
SpectrumList_MZRefiner
(
pwiz::analysis
)
BinaryData
(
pwiz::util
)
EvenPredicate
MSMSRunSummary
(
pwiz::data::pepxml
)
Reader_mz5
(
pwiz::msdata
)
SpectrumList_MZWindow
(
pwiz::analysis
)
BinaryDataArray
(
pwiz::msdata
)
EvenRequester
MSnHeader
(
pwiz::msdata
)
Reader_mzML
(
pwiz::msdata
)
SpectrumList_mzXML
(
pwiz::msdata
)
BinaryDataEncoder
(
pwiz::msdata
)
Evidence
(
pwiz::tradata
)
MSXDemultiplexer
(
pwiz::analysis
)
Reader_mzXML
(
pwiz::msdata
)
SpectrumList_PeakFilter
(
pwiz::analysis
)
BinaryIndexStream
(
pwiz::data
)
ExtendedReaderList
(
pwiz::msdata
)
MyBase
Reader_Shimadzu
(
pwiz::msdata
)
SpectrumList_PeakPicker
(
pwiz::analysis
)
Bucket1D
(
ralab::base::resample
)
ExtraZeroSamplesFilter
(
pwiz::analysis
)
MyPred
Reader_Thermo
(
pwiz::msdata
)
SpectrumList_PrecursorRecalculator
(
pwiz::analysis
)
c
f
MyWrapper
Reader_UIMF
(
pwiz::msdata
)
SpectrumList_PrecursorRefine
(
pwiz::analysis
)
MZIntensityPair
(
pwiz::msdata
)
Reader_UNIFI
(
pwiz::msdata
)
SpectrumList_ScanSummer
(
pwiz::analysis
)
SpectrumListCache::CacheEntry
(
pwiz::msdata
)
Feature
(
pwiz::data::peakdata
)
mzrtEqual
Reader_Waters
(
pwiz::msdata
)
SpectrumList_Shimadzu
(
pwiz::msdata::detail
)
CalibrationParameters
(
pwiz::data
)
FeatureDetector
(
pwiz::analysis
)
MZRTField
(
pwiz::analysis
)
Reader1::ReaderConfig
SpectrumList_Smoother
(
pwiz::analysis
)
CancelListener
FeatureDetectorPeakel
(
pwiz::analysis
)
MZTolerance
(
pwiz::chemistry
)
Reader2::ReaderConfig
SpectrumList_Sorter
(
pwiz::analysis
)
CancelProgressCallback
FeatureDetectorSimple
(
pwiz::analysis
)
n
ReaderFail
(
pwiz::identdata
)
SpectrumList_SorterPredicate_ScanStartTime
(
pwiz::analysis
)
basic_charcounter::category
(
pwiz::minimxml
)
FeatureFile
(
pwiz::data::peakdata
)
ReaderFail
(
pwiz::msdata
)
SpectrumList_Thermo
(
pwiz::msdata::detail
)
CharIndexedVector
(
pwiz::util
)
FeatureModeler
(
pwiz::analysis
)
nativeID_less
(
pwiz::peptideid
)
ReaderFail
(
pwiz::proteome
)
SpectrumList_TitleMaker
(
pwiz::analysis
)
CharIndexedVectorConstIterator
(
pwiz::util
)
FeatureModeler_Gaussian
(
pwiz::analysis
)
NestedHandler
ReaderFail
(
pwiz::tradata
)
SpectrumList_UIMF
(
pwiz::msdata::detail
)
CharIndexedVectorIterator
(
pwiz::util
)
Fifth
NNLSSolver
(
pwiz::analysis
)
ReaderList
(
pwiz::identdata
)
SpectrumList_UNIFI
(
pwiz::msdata::detail
)
Chromatogram
(
pwiz::msdata
)
FifthHandler
PeakFamilyDetectorFT::NoDataException
(
pwiz::analysis
)
ReaderList
(
pwiz::msdata
)
SpectrumList_Waters
(
pwiz::msdata::detail
)
ChromatogramDataFilter
(
pwiz::analysis
)
FileContent
(
pwiz::msdata
)
Noise
(
pwiz::analysis
)
ReaderList
(
pwiz::tradata
)
SpectrumList_ZeroSamplesFilter
(
pwiz::analysis
)
ChromatogramIdentity
(
pwiz::msdata
)
FileDescription
(
pwiz::msdata
)
NoiseCalculator
(
pwiz::analysis
)
ReaderList
(
pwiz::proteome
)
SpectrumListBase
(
pwiz::msdata
)
ChromatogramList
(
pwiz::msdata
)
Filter
(
pwiz::identdata
)
NoiseCalculator_2Pass
(
pwiz::analysis
)
ReaderTestConfig
(
pwiz::util
)
SpectrumListCache
(
pwiz::msdata
)
ChromatogramList_ABI
(
pwiz::msdata::detail
)
FilterWrapper
NoVendorPeakPickingException
(
pwiz::analysis
)
MSIHandler::Record
(
pwiz::util
)
SpectrumListFactory
(
pwiz::analysis
)
ChromatogramList_Agilent
(
pwiz::msdata::detail
)
First
NthPower
(
ralab::base::stats
)
PepxmlRecordReader::record
(
pwiz::analysis
)
SpectrumListIonMobilityBase
(
pwiz::msdata
)
ChromatogramList_Bruker
(
pwiz::msdata::detail
)
FirstHandler
o
Record
(
pwiz::proteome::AminoAcid::Info
)
SpectrumListSimple
(
pwiz::msdata
)
ChromatogramList_Filter
(
pwiz::analysis
)
FlatRecordBuilder
(
pwiz::peptideid
)
PeptideID::Record
(
pwiz::peptideid
)
SpectrumListWrapper
(
pwiz::msdata
)
ChromatogramList_FilterPredicate_IndexSet
(
pwiz::analysis
)
Formula
(
pwiz::chemistry
)
OBO
(
pwiz::data
)
Record
(
pwiz::chemistry::Element::Info
)
SpectrumPeakExtractor
(
pwiz::analysis
)
ChromatogramList_LockmassRefiner
(
pwiz::analysis
)
FragmentArray
(
pwiz::identdata
)
once_flag_proxy
(
pwiz::util
)
IPIFASTADatabase::Record
(
pwiz::proteome
)
SpectrumPeakExtractorTest
ChromatogramList_mzML
(
pwiz::msdata
)
Fragmentation
(
pwiz::proteome
)
OneMinusAbs
RegexCVMap
(
pwiz::identdata
)
SpectrumQuery
(
pwiz::data::pepxml
)
ChromatogramList_SavitzkyGolaySmoother
(
pwiz::analysis
)
FrequencyData
(
pwiz::data
)
OrderedPair
(
pwiz::math
)
RegionAnalyzer
(
pwiz::analysis
)
RegionAnalyzer::SpectrumStats
(
pwiz::analysis
)
ChromatogramList_Shimadzu
(
pwiz::msdata::detail
)
FrequencyEstimator
(
pwiz::frequency
)
OrderedPairContainerRef
(
pwiz::math
)
RegionSIC
(
pwiz::analysis
)
SpectrumTable
(
pwiz::analysis
)
ChromatogramList_Thermo
(
pwiz::msdata::detail
)
FrequencyEstimatorPhysicalModel
(
pwiz::frequency
)
Organization
(
pwiz::identdata
)
RegionSlice
(
pwiz::analysis
)
SpectrumWorkerThreads
(
pwiz::msdata
)
ChromatogramList_Waters
(
pwiz::msdata::detail
)
FrequencyEstimatorSimple
(
pwiz::frequency
)
organization_p
(
pwiz::identdata
)
RegionTIC
(
pwiz::analysis
)
SquareRoot
(
ralab::base::resample
)
ChromatogramList_XICGenerator
(
pwiz::analysis
)
FTMSCompFunctor
(
ralab::base::resample
)
XMLWriter::OutputObserver
(
pwiz::minimxml
)
Residue
(
pwiz::identdata
)
RegionAnalyzer::Stats
(
pwiz::analysis
)
ChromatogramListBase
(
pwiz::msdata
)
FTSieve
OverlapDemultiplexer
(
pwiz::analysis
)
RetentionTime
(
pwiz::tradata
)
Stats
(
pwiz::math
)
ChromatogramListFactory
(
pwiz::analysis
)
g
p
ridgeLine
Handler::Status
(
pwiz::minimxml::SAXParser
)
ChromatogramListSimple
(
pwiz::msdata
)
RocDataPoint
(
pwiz::data::pepxml
)
StringMatchCVMap
(
pwiz::identdata
)
ChromatogramListWrapper
(
pwiz::analysis
)
Gauss
(
ralab::base::filter::utilities
)
pairData
Root
SubstitutionModification
(
pwiz::identdata
)
ClickwrapPrompter
(
pwiz::util
)
Gauss_1deriv
(
ralab::base::filter::utilities
)
Parabola
(
pwiz::math
)
RootHandler
t
Image::Color
(
pwiz::util
)
Goober
ParamContainer
(
pwiz::data
)
rtimeMap
Component
(
pwiz::msdata
)
h
Parameter
(
pwiz::data::pepxml
)
RTMatches_Any
(
pwiz::analysis
)
TabHandler
(
pwiz::util
)
ComponentList
(
pwiz::msdata
)
Software::Parameter
(
pwiz::data::peakdata
)
RTMatches_Contains
(
pwiz::analysis
)
TabReader
(
pwiz::util
)
Compound
(
pwiz::tradata
)
Handler
(
pwiz::minimxml::SAXParser
)
ParameterEstimator
(
pwiz::frequency
)
RTMatches_IsContainedIn
(
pwiz::analysis
)
TabularConfig
(
pwiz::analysis
)
FrequencyEstimatorPhysicalModel::Config
(
pwiz::frequency
)
HandlerFeature
(
pwiz::data::peakdata
)
ParametrizedCosine
Run
(
pwiz::msdata
)
Target
(
pwiz::msdata
)
PeakDetectorMatchedFilter::Config
(
pwiz::frequency
)
HandlerPeak
(
pwiz::data::peakdata
)
ParametrizedDerivativeSlice
(
pwiz::frequency::DerivativeTest
)
RunSummary
(
pwiz::analysis
)
Target
(
pwiz::tradata
)
Reader::Config
(
pwiz::identdata
)
HandlerPeakel
(
pwiz::data::peakdata
)
ParametrizedFunction
(
pwiz::frequency
)
s
TargetList
(
pwiz::tradata
)
Reader1::Config
HasBinaryDataPredicate
ParametrizedFunctionSlice
(
pwiz::frequency::DerivativeTest
)
Term
(
pwiz::data
)
Reader2::Config
HasID
(
pwiz::data::diff_impl
)
ParamGroup
(
pwiz::data
)
Same
(
pwiz::data::diff_impl
)
TestAminoAcid
Serializer_mzIdentML::Config
(
pwiz::identdata
)
HermiteInterpolate
(
ralab::base::base::utilities
)
SpectrumList_Demux::Params
(
pwiz::analysis
)
SameDeep
(
pwiz::data::diff_impl
)
TestChargeStateCalculator
Serializer_protXML::Config
(
pwiz::identdata
)
i
MSXDemultiplexer::Params
(
pwiz::analysis
)
Sample
(
pwiz::msdata
)
TestData
Serializer_pepXML::Config
(
pwiz::identdata
)
OverlapDemultiplexer::Params
(
pwiz::analysis
)
Sample
(
pwiz::identdata
)
TestDatum
Serializer_Text::Config
(
pwiz::identdata
)
id_p
(
pwiz::identdata
)
parentIon
SampleDatum
(
pwiz::data
)
TestDeisotopeCalculator
PepxmlRecordReader::Config
(
pwiz::analysis
)
IDemultiplexer
(
pwiz::analysis
)
Peak
(
pwiz::data::peakdata
)
SampledData
(
pwiz::math::MatchedFilter
)
TestDeisotoper
MSDataCache::Config
(
pwiz::analysis
)
IdentData
(
pwiz::identdata
)
Peak
(
pwiz::analysis
)
SampleEnzyme
(
pwiz::data::pepxml
)
TestETDMassFilter
RegionAnalyzer::Config
(
pwiz::analysis
)
IdentDataFile
(
pwiz::identdata
)
PeakData
(
pwiz::data::peakdata
)
SamplingWith
(
ralab::base::resample
)
TestFormula
RegionSIC::Config
(
pwiz::analysis
)
Identifiable
(
pwiz::identdata
)
PeakDetector
(
pwiz::frequency
)
SavitzkyGolaySmoother
(
pwiz::analysis
)
TestFragmentation
RegionSlice::Config
(
pwiz::analysis
)
IdentifiableParamContainer
(
pwiz::identdata
)
PeakDetector
(
pwiz::analysis
)
saxstring
(
pwiz::minimxml::SAXParser
)
TestInfo
RegionTIC::Config
(
pwiz::analysis
)
IInterpolation
PeakDetectorMatchedFilter
(
pwiz::frequency
)
Scan
(
pwiz::msdata
)
TestIterationListener
BinaryDataEncoder::Config
(
pwiz::msdata
)
Image
(
pwiz::util
)
PeakDetectorNaive
(
pwiz::frequency
)
Scan
(
pwiz::data::peakdata
)
TestIterationListener_WithCancel
RunSummary::Config
(
pwiz::analysis
)
Index
(
pwiz::data
)
Peakel
(
pwiz::data::peakdata
)
ScanList
(
pwiz::msdata
)
TestListener
SpectrumBinaryData::Config
(
pwiz::analysis
)
Index_mzML
(
pwiz::msdata
)
PeakelGrower
(
pwiz::analysis
)
ScanSettings
(
pwiz::msdata
)
TestMetadataFixer
SpectrumTable::Config
(
pwiz::analysis
)
SpectrumList_mzXML::index_not_found
(
pwiz::msdata
)
PeakelGrower_Proximity
(
pwiz::analysis
)
ScanWindow
(
pwiz::msdata
)
TestModification
FeatureDetectorPeakel::Config
(
pwiz::analysis
)
IndexList
(
pwiz::msdata
)
PeakelPicker
(
pwiz::analysis
)
PeakDetectorMatchedFilter::Score
(
pwiz::frequency
)
TestModifiedPeptide
PeakelGrower_Proximity::Config
(
pwiz::analysis
)
IndexList
(
pwiz::proteome
)
PeakelPicker_Basic
(
pwiz::analysis
)
scoreChain
TestMS2Denoise
Reader::Config
(
pwiz::msdata
)
Inputs
(
pwiz::identdata
)
PeakExtractor
(
pwiz::analysis
)
SearchDatabase
(
pwiz::data::pepxml
)
TestOperator
Serializer_mzML::Config
(
pwiz::msdata
)
Instrument
(
pwiz::tradata
)
PeakFamily
(
pwiz::data::peakdata
)
SearchDatabase
(
pwiz::identdata
)
TestOutputObserver
Serializer_mzXML::Config
(
pwiz::msdata
)
InstrumentConfiguration
(
pwiz::msdata
)
PeakFamilyDetector
(
pwiz::analysis
)
SearchHit
(
pwiz::data::pepxml
)
TestPair
NoiseCalculator_2Pass::Config
(
pwiz::analysis
)
IntegerSet
(
pwiz::util
)
PeakFamilyDetectorFT
(
pwiz::analysis
)
SearchModification
(
pwiz::identdata
)
TestPathmask
SpectrumIterator::Config
(
pwiz::msdata
)
Interpretation
(
pwiz::tradata
)
PeakFinder
(
pwiz::analysis
)
SearchResult
(
pwiz::data::pepxml
)
TestPathPredicate
(
pwiz::util
)
PeakelPicker_Basic::Config
(
pwiz::analysis
)
IntegerSet::Interval
(
pwiz::util
)
PeakFinder_SNR
(
pwiz::analysis
)
SearchScore
(
pwiz::data::pepxml
)
TestPeptide
PeakFamilyDetectorFT::Config
(
pwiz::analysis
)
IonType
(
pwiz::identdata
)
PeakFitter
(
pwiz::analysis
)
SearchSummary
(
pwiz::data::pepxml
)
TestReader
PeakFinder_SNR::Config
(
pwiz::analysis
)
IPIFASTADatabase
(
pwiz::proteome
)
PeakFitter_Parabola
(
pwiz::analysis
)
Second
TestScanSummerCalculator
PeakFitter_Parabola::Config
(
pwiz::analysis
)
IPrecursorMaskCodec
(
pwiz::analysis
)
PeakPicker
(
ralab::base::ms
)
SecondHandler
TestSpectrumInfo
Digestion::Config
(
pwiz::proteome
)
Is_T2D_Directory
Pep2MzIdent
(
pwiz::identdata
)
SelectedIndexPredicate
TestThresholder
Reader_FASTA::Config
(
pwiz::proteome
)
IsDirectory
Peptide
(
pwiz::proteome
)
SelectedIon
(
pwiz::msdata
)
TextWriter
(
pwiz::identdata
)
Serializer_FASTA::Config
(
pwiz::proteome
)
IsIMSData
Peptide
(
pwiz::tradata
)
seq_p
(
pwiz::identdata
)
TextWriter
(
pwiz::proteome
)
MS2Deisotoper::Config
(
pwiz::analysis
)
isoChain
Peptide
(
pwiz::identdata
)
SeqMinus
(
ralab::base::base::utilities
)
TextWriter
(
pwiz::msdata
)
MS2NoiseFilter::Config
(
pwiz::analysis
)
IsolationWindow
(
pwiz::msdata
)
PeptideEvidence
(
pwiz::identdata
)
SeqPlus
(
ralab::base::base::utilities
)
TextWriter
(
pwiz::tradata
)
PrecursorMassFilter::Config
(
pwiz::analysis
)
IsolationWindow
(
pwiz::analysis
)
PeptideHypothesis
(
pwiz::identdata
)
sequence_p
(
pwiz::identdata
)
ThreadStatus
PrecursorRecalculatorDefault::Config
(
pwiz::analysis
)
IsolationWindowFilter
(
pwiz::analysis
)
PeptideID
(
pwiz::peptideid
)
SequenceCollection
(
pwiz::identdata
)
ThresholdFilter
(
pwiz::analysis
)
IsotopeEnvelopeEstimator::Config
(
pwiz::chemistry
)
Isotope
(
pwiz::chemistry::detail
)
PeptideID_flat
(
pwiz::peptideid
)
Serializer_FASTA
(
pwiz::proteome
)
TimeIntensityPair
(
pwiz::msdata
)
XMLWriter::Config
(
pwiz::minimxml
)
IsotopeCalculator
(
pwiz::chemistry
)
PeptideID_pepXml
(
pwiz::peptideid
)
Serializer_MGF
(
pwiz::msdata
)
Timer
(
pwiz::util
)
Configuration
(
pwiz::tradata
)
isotopeChain
PeptideIDMap
(
pwiz::peptideid
)
Serializer_MSn
(
pwiz::msdata
)
TraData
(
pwiz::tradata
)
Digestion::const_iterator
(
pwiz::proteome
)
IsotopeEnvelopeEstimator
(
pwiz::chemistry
)
PeptideProphetResult
(
pwiz::data::pepxml
)
Serializer_mzIdentML
(
pwiz::identdata
)
TraDataFile
(
pwiz::tradata
)
BinaryData::const_iterator
(
pwiz::util
)
IsotopeTable
(
pwiz::chemistry
)
PeptideProphetSummary
(
pwiz::data::pepxml
)
Serializer_mzML
(
pwiz::msdata
)
Transition
(
pwiz::tradata
)
Contact
(
pwiz::msdata
)
IsoWindowHasher
(
pwiz::analysis
)
PepxmlRecordReader
(
pwiz::analysis
)
Serializer_mzXML
(
pwiz::msdata
)
TranslationTable
(
pwiz::identdata
)
Contact
(
pwiz::tradata
)
IsRawData
PepXMLSpecificity
(
pwiz::identdata
)
Serializer_pepXML
(
pwiz::identdata
)
TruncatedLorentzian
(
pwiz::frequency
)
Contact
(
pwiz::identdata
)
IsRawFile
Person
(
pwiz::identdata
)
Serializer_protXML
(
pwiz::identdata
)
TruncatedLorentzianEstimator
(
pwiz::frequency
)
ContactRole
(
pwiz::identdata
)
IsTDF
person_p
(
pwiz::identdata
)
Serializer_Text
(
pwiz::identdata
)
TruncatedLorentzianParameters
(
pwiz::frequency
)
Convert2Dense
(
ralab::base::resample
)
IsWiffFile
pinned_gcroot
(
msclr
)
Serializer_traML
(
pwiz::tradata
)
u
Correlation
(
pwiz::math::MatchedFilter
)
IterationListener
(
pwiz::util
)
Image::Point
(
pwiz::util
)
SetRetentionTime
CosineInterpolate
(
ralab::base::base::utilities
)
IterationListenerRegistry
(
pwiz::util
)
PPMCompFunctor
(
ralab::base::resample
)
SHA1_ostream
(
pwiz::util
)
IterationListener::UpdateMessage
(
pwiz::util
)
CSHA1
IntegerSet::Iterator
(
pwiz::util
)
Precursor
(
pwiz::msdata
)
SHA1_WORKSPACE_BLOCK
usage_exception
(
pwiz::util
)
CubicHermiteSpline
(
pwiz::analysis
)
PeptideID::Iterator
(
pwiz::peptideid
)
Precursor
(
pwiz::tradata
)
SHA1Calculator
(
pwiz::util
)
user_error
(
pwiz::util
)
CubicHermiteSplineTest
BinaryData::iterator
(
pwiz::util
)
precursorGroup
SHA1Filter
(
pwiz::util
)
UserParam
(
pwiz::data
)
CubicInterpolate
(
ralab::base::base::utilities
)
PeptideID::IteratorInternal
(
pwiz::peptideid
)
SpectrumInfo::PrecursorInfo
(
pwiz::msdata
)
SHA1OutputObserver
(
pwiz::msdata
)
UserParamNameIs
CustomPair
k
PrecursorRecalculator::PrecursorInfo
(
pwiz::analysis
)
SHA1SymmetricFilter
(
pwiz::util
)
v
CV
(
pwiz::cv
)
SpectrumList_PrecursorRefine::PrecursorInfo
(
pwiz::analysis
)
shared_map
(
pwiz::util
)
CVIDMatchCVMap
(
pwiz::identdata
)
KernelTraits
(
pwiz::math::MatchedFilter
)
PrecursorMaskCodec
(
pwiz::analysis
)
SpectrumIterator::Sieve
(
pwiz::msdata
)
Validation
(
pwiz::tradata
)
CVMap
(
pwiz::identdata
)
KernelTraitsBase
(
pwiz::math::MatchedFilter
)
PrecursorMassFilter
(
pwiz::analysis
)
Simple
VectorFunction
(
pwiz::frequency::DerivativeTest
)
CVParam
(
pwiz::data
)
KernelTraitsBase< Y(*)(X)>
(
pwiz::math::MatchedFilter
)
PrecursorRecalculator
(
pwiz::analysis
)
SimpleAnalyzer
VectorTabHandler
(
pwiz::util
)
CVParamIs
(
pwiz::data
)
l
PrecursorRecalculatorDefault
(
pwiz::analysis
)
SimplePeakArea
(
ralab::base::ms
)
SpectrumList_Waters::VendorOptions
(
pwiz::msdata::detail
)
CVParamIsChildOf
(
pwiz::data
)
ProteinList_DecoyGenerator::Predicate
(
pwiz::analysis
)
SimplePicker
(
ralab::base::ms
)
Version
(
pwiz::identdata
)
CVTermInfo
(
pwiz::cv
)
LegacyAdapter_Instrument
(
pwiz::msdata
)
ProteinList_Filter::Predicate
(
pwiz::analysis
)
SimpleProgressCallback
Version
(
pwiz::analysis
)
CVTranslator
(
pwiz::data
)
LegacyAdapter_Software
(
pwiz::msdata
)
SpectrumList_Filter::Predicate
(
pwiz::analysis
)
Smoother
(
pwiz::analysis
)
Version
(
pwiz::tradata
)
CwtPeakDetector
(
pwiz::analysis
)
LinearInterpolate
(
ralab::base::base::utilities
)
ChromatogramList_Filter::Predicate
(
pwiz::analysis
)
Software
(
pwiz::msdata
)
Version
(
pwiz
)
d
LinearLeastSquares
(
pwiz::math
)
SpectrumList_Sorter::Predicate
(
pwiz::analysis
)
Software
(
pwiz::data::peakdata
)
Version
(
pwiz::msdata
)
LinearLeastSquares< LinearLeastSquaresType_LU >
(
pwiz::math
)
Prediction
(
pwiz::tradata
)
Software
(
pwiz::tradata
)
Version
(
pwiz::proteome
)
DaCompFunctor
(
ralab::base::resample
)
LinearLeastSquares< LinearLeastSquaresType_QR >
(
pwiz::math
)
PrintAttribute
software_p
(
pwiz::identdata
)
virtual_map
(
pwiz::util
)
DatabaseTranslation
(
pwiz::identdata
)
LinearSolver
(
pwiz::math
)
PrintEventHandler
SourceFile
(
pwiz::msdata
)
w
DataCollection
(
pwiz::identdata
)
LinearSolver< LinearSolverType_LU >
(
pwiz::math
)
ProcessingMethod
(
pwiz::msdata
)
SourceFile
(
pwiz::identdata
)
DataFilter
(
pwiz::data::pepxml
)
LinearSolver< LinearSolverType_QR >
(
pwiz::math
)
Product
(
pwiz::msdata
)
Specificity
(
pwiz::data::pepxml
)
WhittakerSmoother
(
pwiz::analysis
)
MSDataAnalyzer::DataInfo
(
pwiz::analysis
)
LocalMaximumPeakDetector
(
pwiz::analysis
)
Product
(
pwiz::tradata
)
SpectraData
(
pwiz::identdata
)
IdentDataFile::WriteConfig
(
pwiz::identdata
)
DataProcessing
(
pwiz::msdata
)
LocalMinPeakArea
(
ralab::base::ms
)
ProductSpace
(
pwiz::math::MatchedFilter
)
Spectrum
(
pwiz::msdata
)
MSDataFile::WriteConfig
(
pwiz::msdata
)
DatasetDerivation
(
pwiz::data::pepxml
)
PeptideID::Location
(
pwiz::peptideid
)
MSDataAnalyzerDriver::ProgressCallback
(
pwiz::analysis
)
SpectrumBinaryData
(
pwiz::analysis
)
TraDataFile::WriteConfig
(
pwiz::tradata
)
Datum
location_less
(
pwiz::peptideid
)
Protein
(
pwiz::proteome
)
SpectrumDataFilter
(
pwiz::analysis
)
ProteomeDataFile::WriteConfig
(
pwiz::proteome
)
DBSequence
(
pwiz::identdata
)
Lock
(
pwiz::util
)
Protein
(
pwiz::tradata
)
SpectrumIdentification
(
pwiz::identdata
)
WriteCVParam
dbsequence_p
(
pwiz::identdata
)
m
ProteinAmbiguityGroup
(
pwiz::identdata
)
SpectrumIdentificationItem
(
pwiz::identdata
)
x
DefaultArrayLengthSorter
ProteinDetection
(
pwiz::identdata
)
SpectrumIdentificationList
(
pwiz::identdata
)
DefaultReaderList
(
pwiz::msdata
)
MagnitudeLorentzian
(
pwiz::frequency
)
ProteinDetectionHypothesis
(
pwiz::identdata
)
SpectrumIdentificationProtocol
(
pwiz::identdata
)
XMLWriter
(
pwiz::minimxml
)
DefaultReaderList
(
pwiz::proteome
)
MascotReader
(
pwiz::identdata
)
ProteinDetectionList
(
pwiz::identdata
)
SpectrumIdentificationResult
(
pwiz::identdata
)
z
DefaultReaderList
(
pwiz::tradata
)
MassAbundance
(
pwiz::chemistry
)
ProteinDetectionProtocol
(
pwiz::identdata
)
SpectrumIdentity
(
pwiz::msdata
)
DefaultReaderList
(
pwiz::identdata
)
MassTable
(
pwiz::identdata
)
ProteinList
(
pwiz::proteome
)
SpectrumIdentityFromMzXML
(
pwiz::msdata
)
ZeroSampleFiller
(
pwiz::analysis
)
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