Package org.jmol.shape
Class Mesh
- java.lang.Object
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- org.jmol.util.MeshSurface
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- org.jmol.shape.Mesh
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- Direct Known Subclasses:
DrawMesh
,IsosurfaceMesh
public class Mesh extends MeshSurface
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Field Summary
Fields Modifier and Type Field Description int
atomIndex
protected BS
bsTemp
java.lang.Object
cappingObject
int
checkByteCount
int
color
java.lang.String
colorCommand
boolean
colorDensity
int
colorType
int[]
connectedAtoms
int
diameter
boolean
drawTriangles
boolean
fillTriangles
boolean
frontOnly
boolean
havePlanarContours
boolean
haveXyPoints
int
index
boolean
insideOut
boolean
isModelConnected
boolean
isShell
boolean
isTwoSided
boolean
isValid
javajs.util.P3
lattice
int
lighting
javajs.util.Lst<javajs.util.P3[]>
lineData
Mesh
linkedMesh
short
meshColix
int
modelIndex
private boolean
normalsInverted
short[]
normixes
static java.lang.String
PREVIOUS_MESH_ID
javajs.util.P3
ptCenter
boolean
recalcAltVertices
float
scale3d
java.lang.String
scriptCommand
boolean
showContourLines
boolean
showPoints
boolean
showTriangles
java.lang.Object
slabbingObject
short[]
symopColixes
short[][]
symopNormixes
javajs.util.M4[]
symops
java.lang.String
thisID
java.lang.String[]
title
SymmetryInterface
unitCell
boolean
useColix
javajs.util.V3
vAB
java.util.Map<java.lang.String,BS>
vertexColorMap
int
visibilityFlags
boolean
visible
float
volumeRenderPointSize
javajs.util.V3
vTemp
float
width
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Fields inherited from class org.jmol.util.MeshSurface
altVertices, bsDisplay, bsPolygons, bsSlabDisplay, bsSlabGhost, colix, colixBack, colorsExplicit, dataOnly, haveQuads, iA, iB, iC, isColorSolid, isDrawPolygon, isMerged, mat4, mergePolygonCount0, mergeVertexCount0, meshType, normalCount, normals, normalsTemp, normixCount, nSets, offset, P_CHECK, P_CONTOUR, P_EXPLICIT_COLOR, pc, pcs, pis, polygonCount0, SEED_COUNT, slabColix, slabMeshType, slabOptions, spanningVectors, surfaceAtoms, surfaceSet, vc, vcs, vertexCount0, vertexSets, vertexSource, vs, vvs, vwr
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Constructor Summary
Constructors Constructor Description Mesh()
always use Mesh().mesh1(thisID, colix, index)
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Method Summary
All Methods Static Methods Instance Methods Concrete Methods Modifier and Type Method Description static boolean
checkWithin(javajs.util.T3 pti, javajs.util.Lst<javajs.util.P3> withinPoints, float withinDistance2, boolean isWithinNot)
void
clear(java.lang.String meshType)
void
clearMesh(java.lang.String meshType)
private void
flipLighting(int lighting)
javajs.util.P3[]
getBoundingBox()
(package private) java.lang.Object
getInfo(boolean isAll)
protected float
getMinDistance2ForVertexGrouping()
javajs.util.V3[]
getNormals(javajs.util.T3[] vertices, javajs.util.P4 plane)
javajs.util.V3[]
getNormalsTemp()
javajs.util.P3[]
getOffsetVertices(javajs.util.P4 thePlane)
protected java.lang.String
getRendering()
java.lang.String
getState(java.lang.String type)
SymmetryInterface
getUnitCell()
int
getVertexIndexFromNumber(int vertexIndex)
protected BS
getVisibleVBS()
BS
getVisibleVertexBitSet()
void
initialize(int lighting, javajs.util.T3[] vertices, javajs.util.P4 plane)
private void
invertNormixes()
Mesh
mesh1(Viewer vwr, java.lang.String thisID, short colix, int index)
void
rotateTranslate(javajs.util.Quat q, javajs.util.T3 offset, boolean isAbsolute)
void
setLighting(int lighting)
short[]
setNormixes(javajs.util.V3[] normals)
void
setShowWithin(javajs.util.Lst<javajs.util.P3> showWithinPoints, float showWithinDistance2, boolean isWithinNot)
void
setTokenProperty(int tokProp, boolean bProp)
void
setTranslucent(boolean isTranslucent, float iLevel)
void
setVisibilityFlags(int n)
protected void
sumVertexNormals(javajs.util.T3[] vertices, javajs.util.V3[] normals)
protected static void
sumVertexNormals2(Mesh m, javajs.util.T3[] vertices, javajs.util.V3[] normals)
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Methods inherited from class org.jmol.util.MeshSurface
addPolygon, addPolygonC, addQuad, addTriangle, addTriangleCheck, addV, addVCVal, getFaces, getMeshSlicer, getResolution, getSlabColor, getSlabType, getSphereData, getSphericalInterpolationFraction, getVertices, invalidatePolygons, newMesh, resetSlab, setABC, setBoundingBox, setBox, setColix, setColixBack, setPolygonCount, setTranslucentVertices, slabBrillouin, slabPolygonsList
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Field Detail
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PREVIOUS_MESH_ID
public static final java.lang.String PREVIOUS_MESH_ID
- See Also:
- Constant Field Values
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title
public java.lang.String[] title
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meshColix
public short meshColix
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normixes
public short[] normixes
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lineData
public javajs.util.Lst<javajs.util.P3[]> lineData
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thisID
public java.lang.String thisID
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isValid
public boolean isValid
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scriptCommand
public java.lang.String scriptCommand
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colorCommand
public java.lang.String colorCommand
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lattice
public javajs.util.P3 lattice
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symops
public javajs.util.M4[] symops
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symopNormixes
public short[][] symopNormixes
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visible
public boolean visible
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lighting
public int lighting
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colorType
public int colorType
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haveXyPoints
public boolean haveXyPoints
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diameter
public int diameter
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width
public float width
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ptCenter
public javajs.util.P3 ptCenter
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linkedMesh
public Mesh linkedMesh
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vertexColorMap
public java.util.Map<java.lang.String,BS> vertexColorMap
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vAB
public javajs.util.V3 vAB
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vTemp
public javajs.util.V3 vTemp
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color
public int color
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useColix
public boolean useColix
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unitCell
public SymmetryInterface unitCell
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scale3d
public float scale3d
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index
public int index
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atomIndex
public int atomIndex
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modelIndex
public int modelIndex
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visibilityFlags
public int visibilityFlags
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insideOut
public boolean insideOut
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checkByteCount
public int checkByteCount
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normalsInverted
private boolean normalsInverted
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showContourLines
public boolean showContourLines
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showPoints
public boolean showPoints
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drawTriangles
public boolean drawTriangles
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fillTriangles
public boolean fillTriangles
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showTriangles
public boolean showTriangles
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frontOnly
public boolean frontOnly
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isShell
public boolean isShell
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isTwoSided
public boolean isTwoSided
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havePlanarContours
public boolean havePlanarContours
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bsTemp
protected BS bsTemp
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colorDensity
public boolean colorDensity
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cappingObject
public java.lang.Object cappingObject
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slabbingObject
public java.lang.Object slabbingObject
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volumeRenderPointSize
public float volumeRenderPointSize
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connectedAtoms
public int[] connectedAtoms
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isModelConnected
public boolean isModelConnected
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recalcAltVertices
public boolean recalcAltVertices
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symopColixes
public short[] symopColixes
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Method Detail
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setVisibilityFlags
public void setVisibilityFlags(int n)
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clear
public void clear(java.lang.String meshType)
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clearMesh
public void clearMesh(java.lang.String meshType)
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initialize
public void initialize(int lighting, javajs.util.T3[] vertices, javajs.util.P4 plane)
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setNormixes
public short[] setNormixes(javajs.util.V3[] normals)
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getNormals
public javajs.util.V3[] getNormals(javajs.util.T3[] vertices, javajs.util.P4 plane)
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setLighting
public void setLighting(int lighting)
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flipLighting
private void flipLighting(int lighting)
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invertNormixes
private void invertNormixes()
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setTranslucent
public void setTranslucent(boolean isTranslucent, float iLevel)
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sumVertexNormals
protected void sumVertexNormals(javajs.util.T3[] vertices, javajs.util.V3[] normals)
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sumVertexNormals2
protected static void sumVertexNormals2(Mesh m, javajs.util.T3[] vertices, javajs.util.V3[] normals)
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getMinDistance2ForVertexGrouping
protected float getMinDistance2ForVertexGrouping()
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getState
public java.lang.String getState(java.lang.String type)
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getRendering
protected java.lang.String getRendering()
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getOffsetVertices
public javajs.util.P3[] getOffsetVertices(javajs.util.P4 thePlane)
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setShowWithin
public void setShowWithin(javajs.util.Lst<javajs.util.P3> showWithinPoints, float showWithinDistance2, boolean isWithinNot)
- Parameters:
showWithinPoints
-showWithinDistance2
-isWithinNot
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checkWithin
public static boolean checkWithin(javajs.util.T3 pti, javajs.util.Lst<javajs.util.P3> withinPoints, float withinDistance2, boolean isWithinNot)
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getVertexIndexFromNumber
public int getVertexIndexFromNumber(int vertexIndex)
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getVisibleVertexBitSet
public BS getVisibleVertexBitSet()
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getVisibleVBS
protected BS getVisibleVBS()
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setTokenProperty
public void setTokenProperty(int tokProp, boolean bProp)
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getInfo
java.lang.Object getInfo(boolean isAll)
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getBoundingBox
public javajs.util.P3[] getBoundingBox()
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getUnitCell
public SymmetryInterface getUnitCell()
- Returns:
- unitcell
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rotateTranslate
public void rotateTranslate(javajs.util.Quat q, javajs.util.T3 offset, boolean isAbsolute)
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getNormalsTemp
public javajs.util.V3[] getNormalsTemp()
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