Package org.biojava.nbio.survival.cox
Class CoxVariables
- java.lang.Object
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- org.biojava.nbio.survival.cox.CoxVariables
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public class CoxVariables extends java.lang.Object
- Author:
- Scooter Willis
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Constructor Summary
Constructors Constructor Description CoxVariables(java.lang.String cohortName, java.lang.String geneSet, java.lang.String genes)
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Method Summary
All Methods Static Methods Instance Methods Concrete Methods Modifier and Type Method Description java.lang.String
encodeFileURL(java.lang.String file)
static java.lang.String
fmt(java.lang.Double d, int precision, int pad)
java.lang.String
getCohortName()
CoxInfo
getCoxInfo(java.lang.String name)
java.util.LinkedHashMap<java.lang.String,CoxInfo>
getCoxInfoHashMap()
java.lang.String
getGenes()
java.lang.String
getGeneSet()
int
getUniqueID()
Need a unique id from Stringvoid
putCoxInfo(java.lang.String name, CoxInfo coxInfo)
java.lang.String
toString()
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Method Detail
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getUniqueID
public int getUniqueID()
Need a unique id from String- Returns:
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putCoxInfo
public void putCoxInfo(java.lang.String name, CoxInfo coxInfo)
- Parameters:
name
-coxInfo
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getCoxInfo
public CoxInfo getCoxInfo(java.lang.String name)
- Parameters:
name
-- Returns:
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encodeFileURL
public java.lang.String encodeFileURL(java.lang.String file)
- Parameters:
file
-- Returns:
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fmt
public static java.lang.String fmt(java.lang.Double d, int precision, int pad)
- Parameters:
d
-precision
-pad
-- Returns:
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toString
public java.lang.String toString()
- Overrides:
toString
in classjava.lang.Object
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getCohortName
public java.lang.String getCohortName()
- Returns:
- the cohortName
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getGeneSet
public java.lang.String getGeneSet()
- Returns:
- the geneSet
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getGenes
public java.lang.String getGenes()
- Returns:
- the genes
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getCoxInfoHashMap
public java.util.LinkedHashMap<java.lang.String,CoxInfo> getCoxInfoHashMap()
- Returns:
- the coxInfoHashMap
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