Class AligPanel
- java.lang.Object
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- java.awt.Component
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- java.awt.Container
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- javax.swing.JComponent
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- javax.swing.JPanel
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- org.biojava.nbio.structure.align.gui.JPrintPanel
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- org.biojava.nbio.structure.align.gui.aligpanel.AligPanel
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- All Implemented Interfaces:
java.awt.event.ActionListener
,java.awt.event.WindowListener
,java.awt.image.ImageObserver
,java.awt.MenuContainer
,java.awt.print.Printable
,java.io.Serializable
,java.util.EventListener
,javax.accessibility.Accessible
,AlignmentPositionListener
public class AligPanel extends JPrintPanel implements AlignmentPositionListener, java.awt.event.WindowListener
A JPanel that can display an AFPChain in a nice way and interact with Jmol.- Author:
- Andreas Prlic
- See Also:
- Serialized Form
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Nested Class Summary
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Nested classes/interfaces inherited from class javax.swing.JPanel
javax.swing.JPanel.AccessibleJPanel
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Nested classes/interfaces inherited from class javax.swing.JComponent
javax.swing.JComponent.AccessibleJComponent
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Field Summary
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Fields inherited from class javax.swing.JComponent
listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW
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Fields inherited from class java.awt.Component
accessibleContext, BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT
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Constructor Summary
Constructors Constructor Description AligPanel()
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Method Summary
All Methods Static Methods Instance Methods Concrete Methods Modifier and Type Method Description void
actionPerformed(java.awt.event.ActionEvent e)
void
addAlignmentPositionListener(AlignmentPositionListener li)
void
destroy()
AFPChain
getAFPChain()
Atom[]
getCa1()
Atom[]
getCa2()
AFPChainCoordManager
getCoordManager()
static void
main(java.lang.String[] args)
void
mouseOverPosition(AlignedPosition p)
void
paintComponent(java.awt.Graphics g)
void
positionSelected(AlignedPosition p)
void
rangeSelected(AlignedPosition start, AlignedPosition end)
void
selectionLocked()
void
selectionUnlocked()
void
setAFPChain(AFPChain afpChain)
void
setAlignmentJmol(AbstractAlignmentJmol jmol)
void
setCa1(Atom[] ca1)
void
setCa2(Atom[] ca2)
void
toggleSelection(AlignedPosition p)
void
windowActivated(java.awt.event.WindowEvent e)
void
windowClosed(java.awt.event.WindowEvent e)
void
windowClosing(java.awt.event.WindowEvent e)
void
windowDeactivated(java.awt.event.WindowEvent e)
void
windowDeiconified(java.awt.event.WindowEvent e)
void
windowIconified(java.awt.event.WindowEvent e)
void
windowOpened(java.awt.event.WindowEvent e)
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Methods inherited from class org.biojava.nbio.structure.align.gui.JPrintPanel
print
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Methods inherited from class javax.swing.JPanel
getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI
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Methods inherited from class javax.swing.JComponent
addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, hide, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingOrigin, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update
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Methods inherited from class java.awt.Container
add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusDownCycle, validate, validateTree
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Methods inherited from class java.awt.Component
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setMixingCutoutShape, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle
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Method Detail
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main
public static void main(java.lang.String[] args)
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getCoordManager
public AFPChainCoordManager getCoordManager()
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addAlignmentPositionListener
public void addAlignmentPositionListener(AlignmentPositionListener li)
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destroy
public void destroy()
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getAFPChain
public AFPChain getAFPChain()
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setAFPChain
public void setAFPChain(AFPChain afpChain)
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paintComponent
public void paintComponent(java.awt.Graphics g)
- Overrides:
paintComponent
in classjavax.swing.JComponent
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mouseOverPosition
public void mouseOverPosition(AlignedPosition p)
- Specified by:
mouseOverPosition
in interfaceAlignmentPositionListener
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positionSelected
public void positionSelected(AlignedPosition p)
- Specified by:
positionSelected
in interfaceAlignmentPositionListener
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rangeSelected
public void rangeSelected(AlignedPosition start, AlignedPosition end)
- Specified by:
rangeSelected
in interfaceAlignmentPositionListener
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selectionLocked
public void selectionLocked()
- Specified by:
selectionLocked
in interfaceAlignmentPositionListener
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selectionUnlocked
public void selectionUnlocked()
- Specified by:
selectionUnlocked
in interfaceAlignmentPositionListener
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toggleSelection
public void toggleSelection(AlignedPosition p)
- Specified by:
toggleSelection
in interfaceAlignmentPositionListener
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setAlignmentJmol
public void setAlignmentJmol(AbstractAlignmentJmol jmol)
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windowActivated
public void windowActivated(java.awt.event.WindowEvent e)
- Specified by:
windowActivated
in interfacejava.awt.event.WindowListener
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windowClosed
public void windowClosed(java.awt.event.WindowEvent e)
- Specified by:
windowClosed
in interfacejava.awt.event.WindowListener
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windowClosing
public void windowClosing(java.awt.event.WindowEvent e)
- Specified by:
windowClosing
in interfacejava.awt.event.WindowListener
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windowDeactivated
public void windowDeactivated(java.awt.event.WindowEvent e)
- Specified by:
windowDeactivated
in interfacejava.awt.event.WindowListener
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windowDeiconified
public void windowDeiconified(java.awt.event.WindowEvent e)
- Specified by:
windowDeiconified
in interfacejava.awt.event.WindowListener
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windowIconified
public void windowIconified(java.awt.event.WindowEvent e)
- Specified by:
windowIconified
in interfacejava.awt.event.WindowListener
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windowOpened
public void windowOpened(java.awt.event.WindowEvent e)
- Specified by:
windowOpened
in interfacejava.awt.event.WindowListener
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actionPerformed
public void actionPerformed(java.awt.event.ActionEvent e)
- Specified by:
actionPerformed
in interfacejava.awt.event.ActionListener
- Overrides:
actionPerformed
in classJPrintPanel
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getCa1
public Atom[] getCa1()
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setCa1
public void setCa1(Atom[] ca1)
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getCa2
public Atom[] getCa2()
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setCa2
public void setCa2(Atom[] ca2)
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