Uses of Class
org.biojava.bio.program.fastq.Fastq
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Packages that use Fastq Package Description org.biojava.bio.program.fastq FASTQ and variants sequence format IO. -
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Uses of Fastq in org.biojava.bio.program.fastq
Methods in org.biojava.bio.program.fastq that return Fastq Modifier and Type Method Description Fastq
FastqBuilder. build()
Build and return a new FASTQ formatted sequence configured from the properties of this builder.Methods in org.biojava.bio.program.fastq that return types with arguments of type Fastq Modifier and Type Method Description java.lang.Iterable<Fastq>
FastqReader. read(java.io.File file)
Read zero or more FASTQ formatted sequences from the specified file.java.lang.Iterable<Fastq>
FastqReader. read(java.io.InputStream inputStream)
Read zero or more FASTQ formatted sequences from the specified input stream.java.lang.Iterable<Fastq>
FastqReader. read(java.net.URL url)
Read zero or more FASTQ formatted sequences from the specified url.Methods in org.biojava.bio.program.fastq with parameters of type Fastq Modifier and Type Method Description <T extends java.lang.Appendable>
TFastqWriter. append(T appendable, Fastq... fastq)
Append the specified FASTQ formatted sequences to the specified appendable.protected void
IlluminaFastqWriter. validate(Fastq fastq)
Validate the specified FASTQ formatted sequence for writing.protected void
SangerFastqWriter. validate(Fastq fastq)
Validate the specified FASTQ formatted sequence for writing.protected void
SolexaFastqWriter. validate(Fastq fastq)
Validate the specified FASTQ formatted sequence for writing.void
FastqWriter. write(java.io.File file, Fastq... fastq)
Write the specified FASTQ formatted sequences to the specified file.void
FastqWriter. write(java.io.OutputStream outputStream, Fastq... fastq)
Write the specified FASTQ formatted sequences to the specified output stream.Method parameters in org.biojava.bio.program.fastq with type arguments of type Fastq Modifier and Type Method Description <T extends java.lang.Appendable>
TFastqWriter. append(T appendable, java.lang.Iterable<Fastq> fastq)
Append the specified FASTQ formatted sequences to the specified appendable.void
FastqWriter. write(java.io.File file, java.lang.Iterable<Fastq> fastq)
Write the specified FASTQ formatted sequences to the specified file.void
FastqWriter. write(java.io.OutputStream outputStream, java.lang.Iterable<Fastq> fastq)
Write the specified FASTQ formatted sequences to the specified output stream.
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