Class RichSequence.Terms

    • Field Detail

      • SPECIES_KEY

        public static java.lang.String SPECIES_KEY
      • STRAIN_KEY

        public static java.lang.String STRAIN_KEY
      • TISSUE_KEY

        public static java.lang.String TISSUE_KEY
      • TRANSPOSON_KEY

        public static java.lang.String TRANSPOSON_KEY
      • PLASMID_KEY

        public static java.lang.String PLASMID_KEY
      • PUBMED_KEY

        public static final java.lang.String PUBMED_KEY
        Holds a reference to the key that must be used to store PubMed references.
        See Also:
        Constant Field Values
      • MEDLINE_KEY

        public static final java.lang.String MEDLINE_KEY
        Holds a reference to the key that must be used to store Medline references.
        See Also:
        Constant Field Values
      • DOI_KEY

        public static final java.lang.String DOI_KEY
        Holds a reference to the key that must be used to store DOI references.
        See Also:
        Constant Field Values
    • Constructor Detail

      • Terms

        public Terms()
    • Method Detail

      • getAdditionalAccessionTerm

        public static ComparableTerm getAdditionalAccessionTerm()
        Getter for the secondary/tertiary/additional accession term
        Returns:
        A Term that represents the secondary accession tag
      • getKeywordTerm

        public static ComparableTerm getKeywordTerm()
        Getter for the keyword term
        Returns:
        a Term that represents the Keyword tag
      • getDateCreatedTerm

        public static ComparableTerm getDateCreatedTerm()
        Getter for the date created term
        Returns:
        a Term
      • getDateUpdatedTerm

        public static ComparableTerm getDateUpdatedTerm()
        Getter for the date updated term
        Returns:
        a Term
      • getDateAnnotatedTerm

        public static ComparableTerm getDateAnnotatedTerm()
        Getter for the date annotated term
        Returns:
        a Term
      • getRelCreatedTerm

        public static ComparableTerm getRelCreatedTerm()
        Getter for the release created term
        Returns:
        a Term
      • getRelUpdatedTerm

        public static ComparableTerm getRelUpdatedTerm()
        Getter for the release updated term
        Returns:
        a Term
      • getRelAnnotatedTerm

        public static ComparableTerm getRelAnnotatedTerm()
        Getter for the release annotated term
        Returns:
        a Term
      • getMolTypeTerm

        public static ComparableTerm getMolTypeTerm()
        getter for the MolType term
        Returns:
        a Term that represents the molecule type
      • getStrandedTerm

        public static ComparableTerm getStrandedTerm()
        Getter for the Strand term; legal values are "single", "double", and "mixed".
        Returns:
        a Term that represents the Strand tag
      • getOrganelleTerm

        public static ComparableTerm getOrganelleTerm()
        Getter for the Organelle term
        Returns:
        a Term that represents the Organelle tag
      • getGeneNameTerm

        public static ComparableTerm getGeneNameTerm()
        Getter for the GeneName term
        Returns:
        The GeneName Term
      • getGeneSynonymTerm

        public static ComparableTerm getGeneSynonymTerm()
        Getter for the GeneSynonym term
        Returns:
        The GeneSynonym Term
      • getOrderedLocusNameTerm

        public static ComparableTerm getOrderedLocusNameTerm()
        Getter for the OrderedLocusName term
        Returns:
        The OrderedLocusName Term
      • getORFNameTerm

        public static ComparableTerm getORFNameTerm()
        Getter for the ORFName term
        Returns:
        The ORFName Term
      • getStrainTerm

        public static ComparableTerm getStrainTerm()
        Getter for the Strain term
        Returns:
        The Strain Term
      • getSpeciesTerm

        public static ComparableTerm getSpeciesTerm()
        Getter for the Species term
        Returns:
        The Species Term
      • getTissueTerm

        public static ComparableTerm getTissueTerm()
        Getter for the Tissue term
        Returns:
        The Tissue Term
      • getTransposonTerm

        public static ComparableTerm getTransposonTerm()
        Getter for the Transposon term
        Returns:
        The Transposon Term
      • getPlasmidTerm

        public static ComparableTerm getPlasmidTerm()
        Getter for the Plasmid term
        Returns:
        The plasmid Term
      • getDataClassTerm

        public static ComparableTerm getDataClassTerm()
        Getter for the DataClass term
        Returns:
        The DataClass Term
      • getFTIdTerm

        public static ComparableTerm getFTIdTerm()
        Getter for the FTId term
        Returns:
        The FTId Term
      • getFeatureDescTerm

        public static ComparableTerm getFeatureDescTerm()
        Getter for the FeatureDesc term
        Returns:
        The FeatureDesc Term
      • getCopyrightTerm

        public static ComparableTerm getCopyrightTerm()
        Getter for the copyright term
        Returns:
        The copyright Term