Class Hierarchy
- java.lang.Object
- org.biojava.utils.AbstractChangeable (implements org.biojava.utils.Changeable)
- org.biojava.bio.symbol.AbstractSymbolList (implements org.biojava.bio.symbol.SymbolList)
- org.biojava.bio.alignment.AbstractULAlignment (implements org.biojava.bio.alignment.UnequalLengthAlignment)
- org.biojava.bio.alignment.FlexibleAlignment (implements org.biojava.bio.alignment.ARAlignment, org.biojava.bio.alignment.EditableAlignment)
- org.biojava.bio.alignment.AbstractULAlignment.SubULAlignment (implements org.biojava.bio.alignment.UnequalLengthAlignment)
- org.biojava.bio.alignment.AbstractULAlignment (implements org.biojava.bio.alignment.UnequalLengthAlignment)
- org.biojava.bio.symbol.AbstractSymbolList (implements org.biojava.bio.symbol.SymbolList)
- org.biojava.bio.alignment.AbstractULAlignment.LeftRightLocationComparator (implements java.util.Comparator<T>)
- org.biojava.bio.alignment.SequenceAlignment
- org.biojava.bio.alignment.NeedlemanWunsch
- org.biojava.bio.alignment.SmithWaterman
- org.biojava.bio.alignment.NeedlemanWunsch
- org.biojava.bio.alignment.SimpleAlignmentElement (implements org.biojava.bio.alignment.AlignmentElement)
- org.biojava.bio.alignment.SubstitutionMatrix
- java.lang.Throwable (implements java.io.Serializable)
- java.lang.Exception
- java.lang.RuntimeException
- org.biojava.bio.BioRuntimeException
- org.biojava.bio.alignment.IllegalAlignmentEditException
- org.biojava.bio.BioRuntimeException
- java.lang.RuntimeException
- java.lang.Exception
- org.biojava.utils.AbstractChangeable (implements org.biojava.utils.Changeable)
Interface Hierarchy
- org.biojava.bio.alignment.AlignmentElement
- org.biojava.utils.Changeable
- org.biojava.bio.symbol.SymbolList
- org.biojava.bio.symbol.Alignment
- org.biojava.bio.alignment.ARAlignment
- org.biojava.bio.alignment.UnequalLengthAlignment
- org.biojava.bio.symbol.Alignment
- org.biojava.bio.symbol.SymbolList
- org.biojava.bio.alignment.EditableAlignment
- org.biojava.bio.alignment.QualitativeAlignment