libStatGen Software
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Public Member Functions | |
virtual void | analyze () |
Perform the analysis associated with this class. | |
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PileupElementBaseQual (const PileupElementBaseQual &q) | |
virtual void | addEntry (SamRecord &record) |
Add an entry to this pileup element. | |
virtual void | reset (int32_t refPosition) |
Resets the entry, setting the new position associated with this element. | |
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PileupElement () | |
Pileup element constructor. | |
PileupElement (const PileupElement &q) | |
Constructor that resets the pileup element, does not copy, just resets. | |
virtual | ~PileupElement () |
Pileup element destructor. | |
const char * | getChromosome () const |
Get the chromosome name stored in this element. | |
int32_t | getRefPosition () const |
Get the reference position stored in this element. | |
char | getRefBase () |
Returns the reference base for this pileup element. More... | |
Additional Inherited Members | |
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static void | setReference (GenomeSequence *reference) |
Set the reference to use for all pilepElements. | |
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static const int32_t | UNSET_POSITION = -1 |
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static GenomeSequence * | getReference () |
Get a pointer to the reference. | |
Definition at line 23 of file TestPileup.h.