Uses of Interface
jebl.evolution.coalescent.DemographicFunction
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Packages that use DemographicFunction Package Description jebl.evolution.coalescent jebl.evolution.treesimulation -
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Uses of DemographicFunction in jebl.evolution.coalescent
Classes in jebl.evolution.coalescent that implement DemographicFunction Modifier and Type Class Description class
CataclysmicDemographic
This class models an exponentially growing (or shrinking) population (Parameters: N0=present-day population size; r=growth rate).class
ConstantPopulation
This class models coalescent intervals for a constant population (parameter: N0=present-day population size).class
ConstExponential
This class models exponential growth from an initial population size.class
ConstLogistic
This class models logistic growth from an initial population size.class
EmpiricalDemographicFunction
class
Expansion
This class models exponential growth from an initial ancestral population size.class
ExponentialGrowth
This class models an exponentially growing (or shrinking) population (Parameters: N0=present-day population size; r=growth rate).class
ExponentialLogistic
This class models logistic growth from an initial exponential phase.class
LogisticGrowth
This class models logistic growth.Methods in jebl.evolution.coalescent with parameters of type DemographicFunction Modifier and Type Method Description static double
Coalescent. calculateLogLikelihood(IntervalList intervals, DemographicFunction demographicFunction)
Calculates the log likelihood of this set of coalescent intervals, given a demographic model.static void
DemographicFunction.Utils. testConsistency(DemographicFunction demographicFunction, int steps, double maxTime)
This function tests the consistency of the getIntensity and getInverseIntensity methods of this demographic model.Constructors in jebl.evolution.coalescent with parameters of type DemographicFunction Constructor Description Coalescent(IntervalList intervals, DemographicFunction demographicFunction)
Coalescent(RootedTree tree, DemographicFunction demographicFunction)
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Uses of DemographicFunction in jebl.evolution.treesimulation
Constructors in jebl.evolution.treesimulation with parameters of type DemographicFunction Constructor Description CoalescentIntervalGenerator(DemographicFunction demographicFunction)
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