- setGenotype(char) - Method in class artificialFastqGenerator.Nucleobase
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Set the nucleobase's genotype.
- setLeftReadAndNeedsWriting(boolean) - Method in class artificialFastqGenerator.Read
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Set whether the Read object is a left read and needs writing.
- setPairedEndRead(Read) - Method in class artificialFastqGenerator.Read
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Set the read with which this read object forms a pair.
- setRedundantReadToNull(T) - Static method in class artificialFastqGenerator.ArtificialFastqGenerationUtils
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Set the sequence field of Read and BabyRead objects to null and then also set the object to null.
- setSequence(ArrayList<Nucleobase>) - Method in class artificialFastqGenerator.AbstractRead
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Set the sequence of nucleobases from the reference genome which this Read object is a read of.
- setTargetCoverage(int) - Method in class artificialFastqGenerator.Nucleobase
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Set the target coverage for this nucleobase (the number of reads we want to include
this nucleobase).
- simulateErrorInRead - Static variable in class artificialFastqGenerator.Main
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- startingX - Static variable in class artificialFastqGenerator.Main
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- startingY - Static variable in class artificialFastqGenerator.Main
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- startSequenceIdentifier - Static variable in class artificialFastqGenerator.Main
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