#!/bin/bash
set -e
pkg="macsyfinder"
if [ "$AUTOPKGTEST_TMP" = "" ] ; then
AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
fi
cp -a /usr/share/doc/${pkg}/examples/* $AUTOPKGTEST_TMP
cd $AUTOPKGTEST_TMP
find . -name "*.gz" -exec gunzip \{\} \;

echo "TEST START"

/usr/bin/macsyfinder --db-type unordered --sequence-db test_base.fa all

/usr/bin/macsyfinder --db-type ordered_replicon --sequence-db ordered_replicon_base all

echo "PASS"
