Class SimpleOrthoPairSet

    • Constructor Detail

      • SimpleOrthoPairSet

        public SimpleOrthoPairSet()
    • Method Detail

      • getName

        public java.lang.String getName()
        Description copied from interface: OrthoPairSet
        retrieves name of this group. Homologene itself does not assign names or identifiers to groups.
      • setName

        public void setName​(java.lang.String name)
        Description copied from interface: OrthoPairSet
        set the name of this group.
      • getMinIdentity

        public double getMinIdentity()
        Description copied from interface: OrthoPairSet
        get the lowest level of identity observed in this Group
      • size

        public int size()
        Description copied from interface: OrthoPairSet
        returns an iterator to the contents of the set. /** no. of entries in this Homologene group
      • getTaxa

        public java.util.Set getTaxa()
        Description copied from interface: OrthoPairSet
        get the taxa represented in this group