Uses of Class
org.biojava.bio.structure.Compound
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Packages that use Compound Package Description org.biojava.bio.structure Interfaces and classes for protein structure (PDB). -
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Uses of Compound in org.biojava.bio.structure
Methods in org.biojava.bio.structure that return Compound Modifier and Type Method Description Compound
Compound. clone()
Compound
Structure. getCompoundById(java.lang.String molId)
request a particular compound by its idCompound
StructureImpl. getCompoundById(java.lang.String molId)
Compound
Chain. getHeader()
Returns the Header ( a Compound object) for this chain.Compound
ChainImpl. getHeader()
Returns the Header ( a Compound object) for this chain.Methods in org.biojava.bio.structure that return types with arguments of type Compound Modifier and Type Method Description java.util.List<Compound>
Structure. getCompounds()
get all the Compounds that are defined in the PDB Headerjava.util.List<Compound>
StructureImpl. getCompounds()
Methods in org.biojava.bio.structure with parameters of type Compound Modifier and Type Method Description void
Chain. setHeader(Compound molId)
Set the Header from the PDB file.void
ChainImpl. setHeader(Compound mol)
Set the Header from the PDB file.Method parameters in org.biojava.bio.structure with type arguments of type Compound Modifier and Type Method Description void
Structure. setCompounds(java.util.List<Compound> molList)
set the compountsvoid
StructureImpl. setCompounds(java.util.List<Compound> molList)
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