Class PDBSRSReader

  • All Implemented Interfaces:
    StructureIO

    public class PDBSRSReader
    extends java.lang.Object
    implements StructureIO
    reads a PDB file from a local SRS installation using getz Actually is the same as PDBFileReader, but instead of reading from a file stream, reads from a buffered stream. if no matching PDB code found, returns null
    Author:
    Andreas Prlic
    • Constructor Summary

      Constructors 
      Constructor Description
      PDBSRSReader()  
    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      Structure getStructureById​(java.lang.String pdbId)
      load a structure from from SRS installation using wgetz returns null if no structure found
      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
    • Constructor Detail

      • PDBSRSReader

        public PDBSRSReader()
    • Method Detail

      • getStructureById

        public Structure getStructureById​(java.lang.String pdbId)
                                   throws java.io.IOException
        load a structure from from SRS installation using wgetz returns null if no structure found
        Specified by:
        getStructureById in interface StructureIO
        Parameters:
        pdbId - a String specifying the id value (PDB code)
        Returns:
        a Structure object
        Throws:
        java.io.IOException - ...