Package org.biojava.bio.structure.gui
A few convenience classes to view protein structures with Jmol (if it is on the classpath), to calculate a protein structure alignment and to investigate the internals of the protein structure alignment algorithm. Possible start classes are BiojavaJmol, AlignmentGui.
-
Class Summary Class Description AlignmentGui A JFrame that allows to trigger a pairwise structure alignment, either from files in a directory, or after manual upload.BiojavaJmol A class that provides a simple GUI for JmolJMatrixPanel a JPanel that can display a difference of distance matrix and paths that have been taken for the alignmentRasmolCommandListener a utility class that listens to Ramsol script commands in the @linkBiojavaJmol
classScaleableMatrixPanel A JPanel that can display the underlying distance matrix data of the protein structure alignment algorithm.SequenceDisplay A sequence display that can show the results of a protein structure alignment.