Uses of Class
org.biojava.bio.program.das.dasalignment.Alignment
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Packages that use Alignment Package Description org.biojava.bio.program.das.dasalignment request alignments via DAS -
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Uses of Alignment in org.biojava.bio.program.das.dasalignment
Methods in org.biojava.bio.program.das.dasalignment that return Alignment Modifier and Type Method Description Alignment
DASAlignmentXMLResponseParser. getAlignment(int position)
Returns Alignment at position ...Alignment[]
DASAlignmentCall. getAlignments()
connect to a DAS alignment service and retreive alignments.Alignment[]
DASAlignmentCall. getAlignments(java.lang.String query)
connect to a DAS alignment service and retreive data.Alignment[]
DASAlignmentClient. getAlignments()
Returns the alignments.Alignment[]
DASAlignmentClient. getAlignments(java.lang.String query_)
Returns the alignments.Alignment[]
DASAlignmentXMLResponseParser. getAlignments()
Returns the alignments.Alignment[]
DASAlignmentCall. parseDASResponse(java.io.InputStream inStream)
parse the Response of a DAS ALignment service and return a biojava Alignment object.
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