Package org.biojava.bio.seq.io.agave
Class AGAVEMapLocation
- java.lang.Object
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- org.biojava.bio.seq.io.agave.AGAVEMapLocation
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public class AGAVEMapLocation extends java.lang.Object
- Author:
- Hanning Ni Doubletwist Inc, Greg Cox
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Constructor Summary
Constructors Constructor Description AGAVEMapLocation()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description void
addPosition(AGAVEMapPosition pos)
java.lang.String
getChromosome()
java.lang.String
getMapType()
java.lang.String
getOrientation()
AGAVEMapPosition
getPosition1()
AGAVEMapPosition
getPosition2()
java.lang.String
getSource()
java.lang.String
getSubSeqStart()
java.lang.String
getUnits()
void
setChromosome(java.lang.String value)
void
setMapType(java.lang.String value)
void
setOrientation(java.lang.String value)
void
setSource(java.lang.String value)
void
setSubSeqStart(java.lang.String value)
void
setUnits(java.lang.String value)
java.lang.String
toString()
java.lang.String
toString(java.lang.String indent, java.lang.String indent_unit)
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Method Detail
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addPosition
public void addPosition(AGAVEMapPosition pos)
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getPosition1
public AGAVEMapPosition getPosition1()
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getPosition2
public AGAVEMapPosition getPosition2()
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setMapType
public void setMapType(java.lang.String value)
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getMapType
public java.lang.String getMapType()
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setUnits
public void setUnits(java.lang.String value)
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getUnits
public java.lang.String getUnits()
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setSource
public void setSource(java.lang.String value)
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getSource
public java.lang.String getSource()
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setChromosome
public void setChromosome(java.lang.String value)
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getChromosome
public java.lang.String getChromosome()
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setSubSeqStart
public void setSubSeqStart(java.lang.String value)
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getSubSeqStart
public java.lang.String getSubSeqStart()
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setOrientation
public void setOrientation(java.lang.String value)
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getOrientation
public java.lang.String getOrientation()
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toString
public java.lang.String toString(java.lang.String indent, java.lang.String indent_unit)
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toString
public java.lang.String toString()
- Overrides:
toString
in classjava.lang.Object
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