static Taxon |
TaxonSQL.addName(java.sql.Connection conn,
Taxon taxon,
java.lang.String nameClass,
java.lang.String newName) |
Deprecated.
Adds a new name of the given nameClass to the taxon.
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static java.lang.String[] |
TaxonSQL.getAllScientificNames(java.sql.Connection conn) |
Deprecated.
Returns all the scientific name s, which are currently stored in the
database.
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static Taxon |
TaxonSQL.getTaxon(java.sql.Connection conn,
java.lang.String name) |
Deprecated.
Attempts to get a Taxon object corresponding to the specified
name.
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static java.util.Set |
TaxonSQL.NCBIids(java.sql.Connection conn) |
Deprecated.
Returns a Set of all NCBI-Taxon-IDs which are currently stored in
the database.
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static void |
TaxonSQL.removeGeneticCodeID(java.sql.Connection conn,
DBHelper helper,
Taxon tdb) |
Deprecated.
Deletes the genetic code annotation from the taxon in the database.
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static void |
TaxonSQL.removeLeftValue(java.sql.Connection conn,
DBHelper helper,
Taxon tdb) |
Deprecated.
Deletes the left value from the specified taxon in the database.
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static void |
TaxonSQL.removeMitochondrialGeneticCodeID(java.sql.Connection conn,
DBHelper helper,
Taxon tdb) |
Deprecated.
Deletes the so called mitochondrial genetic code annotation from the given taxon.
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static void |
TaxonSQL.removeRank(java.sql.Connection conn,
DBHelper helper,
Taxon tdb) |
Deprecated.
Removes the rank persistently from the taxon in the database.
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static void |
TaxonSQL.removeRightValue(java.sql.Connection conn,
DBHelper helper,
Taxon tdb) |
Deprecated.
Deletes the right value from the specified taxon in the database.
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static Taxon |
TaxonSQL.removeTaxon(java.sql.Connection conn,
int ncbi_id,
DBHelper helper) |
Deprecated.
Deletes the taxon given by it's NCBI-Taxon-ID from the database and returns the
removed taxon.
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static void |
TaxonSQL.setGeneticCodeID(java.sql.Connection conn,
Taxon tdb,
int id) |
Deprecated.
Updates the taxon in the database and sets its genetic code id to the specified value.
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static void |
TaxonSQL.setLeftValue(java.sql.Connection conn,
Taxon tdb,
int left) |
Deprecated.
Updates the taxon and sets the left value to the specified value.
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static void |
TaxonSQL.setMitochondrialGeneticCodeID(java.sql.Connection conn,
Taxon tdb,
int id) |
Deprecated.
Updates the given taxon and sets it's so called mitochondrial genetic code id to
the specified value.
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static void |
TaxonSQL.setParent(java.sql.Connection conn,
Taxon child,
Taxon parent) |
Deprecated.
This updates the taxonomic tree in the database and sets the parent of the given
child taxon to the parent taxon.
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static void |
TaxonSQL.setRank(java.sql.Connection conn,
Taxon tdb,
java.lang.String rank) |
Deprecated.
Updates a taxon and sets it's rank to the specified String .
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static void |
TaxonSQL.setRightValue(java.sql.Connection conn,
Taxon tdb,
int right) |
Deprecated.
Updates the taxon in the database and sets the right value to the specified value.
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