Uses of Class
org.biojava.bio.alignment.SequenceAlignment
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Packages that use SequenceAlignment Package Description org.biojava.bio.alignment Classes to generate and describe sequence alignments. -
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Uses of SequenceAlignment in org.biojava.bio.alignment
Subclasses of SequenceAlignment in org.biojava.bio.alignment Modifier and Type Class Description class
NeedlemanWunsch
Needleman and Wunsch defined the problem of global sequence alignments, from the first till the last symbol of a sequence.class
SmithWaterman
Smith and Waterman developed an efficient dynamic programming algorithm to perform local sequence alignments, which returns the most conserved region of two sequences (longest common substring with modifications).
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