Class FileConvert


  • public class FileConvert
    extends java.lang.Object
    Methods to convert a structure object into different file formats.
    Since:
    1.4
    Author:
    Andreas Prlic
    • Constructor Summary

      Constructors 
      Constructor Description
      FileConvert​(Structure struc)
      Constructs a FileConvert object.
    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      boolean doPrintConnections()
      returns if the Connections should be added default is true;
      void setPrintConnections​(boolean printConnections)
      enable/disable printing of connections connections are sometimes buggy in PDB files so there are some cases where one might turn this off.
      void toDASStructure​(XMLWriter xw)
      convert a protein Structure to a DAS Structure XML response .
      java.lang.String toPDB()
      Convert a structure into a PDB file.
      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
    • Constructor Detail

      • FileConvert

        public FileConvert​(Structure struc)
        Constructs a FileConvert object.
        Parameters:
        struc - a Structure object
    • Method Detail

      • doPrintConnections

        public boolean doPrintConnections()
        returns if the Connections should be added default is true;
        Returns:
        if the printConnections flag is set
      • setPrintConnections

        public void setPrintConnections​(boolean printConnections)
        enable/disable printing of connections connections are sometimes buggy in PDB files so there are some cases where one might turn this off.
        Parameters:
        printConnections -
      • toPDB

        public java.lang.String toPDB()
        Convert a structure into a PDB file.
        Returns:
        a String representing a PDB file.
      • toDASStructure

        public void toDASStructure​(XMLWriter xw)
                            throws java.io.IOException
        convert a protein Structure to a DAS Structure XML response .
        Parameters:
        xw - a XMLWriter object
        Throws:
        java.io.IOException - ...