Package htsjdk.samtools.reference
Class SamLocusAndReferenceIterator.SAMLocusAndReference
- java.lang.Object
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- htsjdk.samtools.reference.SamLocusAndReferenceIterator.SAMLocusAndReference
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- Enclosing class:
- SamLocusAndReferenceIterator
public static class SamLocusAndReferenceIterator.SAMLocusAndReference extends Object
Small class to hold together aSamLocusIterator.LocusInfo
and the reference base over that locus.
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Constructor Summary
Constructors Constructor Description SAMLocusAndReference(SamLocusIterator.LocusInfo locus, byte referenceBase)
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description SamLocusIterator.LocusInfo
getLocus()
List<SamLocusIterator.RecordAndOffset>
getRecordAndOffsets()
Getterbyte
getReferenceBase()
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Constructor Detail
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SAMLocusAndReference
public SAMLocusAndReference(SamLocusIterator.LocusInfo locus, byte referenceBase)
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Method Detail
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getLocus
public SamLocusIterator.LocusInfo getLocus()
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getReferenceBase
public byte getReferenceBase()
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getRecordAndOffsets
public List<SamLocusIterator.RecordAndOffset> getRecordAndOffsets()
Getter- Returns:
- The
SamLocusIterator.RecordAndOffset
that overlap this locus. Extracted from theSamLocusIterator.LocusInfo
.
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