Class BCF2FieldWriter.GTWriter
- java.lang.Object
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- htsjdk.variant.variantcontext.writer.BCF2FieldWriter
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- htsjdk.variant.variantcontext.writer.BCF2FieldWriter.GenotypesWriter
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- htsjdk.variant.variantcontext.writer.BCF2FieldWriter.GTWriter
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- Enclosing class:
- BCF2FieldWriter
public static class BCF2FieldWriter.GTWriter extends BCF2FieldWriter.GenotypesWriter
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Nested Class Summary
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Nested classes/interfaces inherited from class htsjdk.variant.variantcontext.writer.BCF2FieldWriter
BCF2FieldWriter.FTGenotypesWriter, BCF2FieldWriter.GenericSiteWriter, BCF2FieldWriter.GenotypesWriter, BCF2FieldWriter.GTWriter, BCF2FieldWriter.IGFGenotypesWriter, BCF2FieldWriter.IntegerTypeGenotypesWriter, BCF2FieldWriter.SiteWriter, BCF2FieldWriter.StaticallyTypeGenotypesWriter
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Constructor Summary
Constructors Constructor Description GTWriter(VCFHeader header, BCF2FieldEncoder fieldEncoder)
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description void
addGenotype(BCF2Encoder encoder, VariantContext vc, Genotype g)
void
start(BCF2Encoder encoder, VariantContext vc)
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Methods inherited from class htsjdk.variant.variantcontext.writer.BCF2FieldWriter.GenotypesWriter
numElements
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Methods inherited from class htsjdk.variant.variantcontext.writer.BCF2FieldWriter
done, getField, getFieldEncoder, getHeader, toString
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Constructor Detail
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GTWriter
public GTWriter(VCFHeader header, BCF2FieldEncoder fieldEncoder)
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Method Detail
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start
public void start(BCF2Encoder encoder, VariantContext vc) throws IOException
- Overrides:
start
in classBCF2FieldWriter.GenotypesWriter
- Throws:
IOException
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addGenotype
public void addGenotype(BCF2Encoder encoder, VariantContext vc, Genotype g) throws IOException
- Overrides:
addGenotype
in classBCF2FieldWriter.GenotypesWriter
- Throws:
IOException
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