Class CytobandParser


  • public class CytobandParser
    extends java.lang.Object
    Parses the cytoband (karyotype) file from UCSC.
    • Field Detail

      • DEFAULT_LOCATION

        public static final java.lang.String DEFAULT_LOCATION
        See Also:
        Constant Field Values
    • Constructor Detail

      • CytobandParser

        public CytobandParser()
    • Method Detail

      • main

        public static void main​(java.lang.String[] args)
      • getAllCytobands

        public java.util.SortedSet<Cytoband> getAllCytobands​(java.net.URL u)
                                                      throws java.io.IOException
        Throws:
        java.io.IOException
      • getAllCytobands

        public java.util.SortedSet<Cytoband> getAllCytobands​(java.io.InputStream instream)
                                                      throws java.io.IOException
        Throws:
        java.io.IOException