Class ClusterProteinChains


  • public class ClusterProteinChains
    extends java.lang.Object
    Clusters the chains of one or two structures by sequence.
    • Method Detail

      • getSequenceAlignmentClusters

        public java.util.List<SequenceAlignmentCluster> getSequenceAlignmentClusters​(double sequenceIdentityThreshold)
        Get a non-redundent set of clusters for a given sequence cutoff
        Parameters:
        sequenceIdentityThreshold -
        Returns:
      • getProteinChainCount

        public int getProteinChainCount()
        Returns:
        the proteinChainCount
      • getNucleicAcidChainCount

        public int getNucleicAcidChainCount()
        Returns:
        the nucleicAcidChainCount