Class MsaProperties


  • public final class MsaProperties
    extends java.lang.Object
    • Constructor Detail

      • MsaProperties

        public MsaProperties​(int number_of_sequences,
                             int length,
                             double gap_ratio,
                             double entropy7,
                             double entropy21,
                             double avg_number_of_gaps,
                             java.lang.String removed_seq)
      • MsaProperties

        public MsaProperties​(Msa msa,
                             java.lang.String removed_seq,
                             boolean calculate_normalized_shannon_entropy)
    • Method Detail

      • getEntropy21

        public final double getEntropy21()
      • getEntropy7

        public final double getEntropy7()
      • getGapRatio

        public final double getGapRatio()
      • getAvgNumberOfGaps

        public final double getAvgNumberOfGaps()
      • getLength

        public final int getLength()
      • getNumberOfSequences

        public final int getNumberOfSequences()
      • getRemovedSeq

        public final java.lang.String getRemovedSeq()