Interface FastqWriter
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- All Known Implementing Classes:
IlluminaFastqWriter
,SangerFastqWriter
,SolexaFastqWriter
public interface FastqWriter
Writer for FASTQ formatted sequences.- Since:
- 3.0.3
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Method Summary
All Methods Instance Methods Abstract Methods Modifier and Type Method Description <T extends java.lang.Appendable>
Tappend(T appendable, java.lang.Iterable<Fastq> fastq)
Append the specified FASTQ formatted sequences to the specified appendable.<T extends java.lang.Appendable>
Tappend(T appendable, Fastq... fastq)
Append the specified FASTQ formatted sequences to the specified appendable.void
write(java.io.File file, java.lang.Iterable<Fastq> fastq)
Write the specified FASTQ formatted sequences to the specified file.void
write(java.io.File file, Fastq... fastq)
Write the specified FASTQ formatted sequences to the specified file.void
write(java.io.OutputStream outputStream, java.lang.Iterable<Fastq> fastq)
Write the specified FASTQ formatted sequences to the specified output stream.void
write(java.io.OutputStream outputStream, Fastq... fastq)
Write the specified FASTQ formatted sequences to the specified output stream.
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Method Detail
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append
<T extends java.lang.Appendable> T append(T appendable, Fastq... fastq) throws java.io.IOException
Append the specified FASTQ formatted sequences to the specified appendable.- Type Parameters:
T
- extends Appendable- Parameters:
appendable
- appendable to append the specified FASTQ formatted sequences to, must not be nullfastq
- variable number of FASTQ formatted sequences to append, must not be null- Returns:
- the specified appendable with the specified FASTQ formatted sequences appended
- Throws:
java.io.IOException
- if an I/O error occurs
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append
<T extends java.lang.Appendable> T append(T appendable, java.lang.Iterable<Fastq> fastq) throws java.io.IOException
Append the specified FASTQ formatted sequences to the specified appendable.- Type Parameters:
T
- extends Appendable- Parameters:
appendable
- appendable to append the specified FASTQ formatted sequences to, must not be nullfastq
- zero or more FASTQ formatted sequences to append, must not be null- Returns:
- the specified appendable with the specified FASTQ formatted sequences appended
- Throws:
java.io.IOException
- if an I/O error occurs
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write
void write(java.io.File file, Fastq... fastq) throws java.io.IOException
Write the specified FASTQ formatted sequences to the specified file.- Parameters:
file
- file to write to, must not be nullfastq
- variable number of FASTQ formatted sequences to write, must not be null- Throws:
java.io.IOException
- if an I/O error occurs
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write
void write(java.io.File file, java.lang.Iterable<Fastq> fastq) throws java.io.IOException
Write the specified FASTQ formatted sequences to the specified file.- Parameters:
file
- file to write to, must not be nullfastq
- zero or more FASTQ formatted sequences to write, must not be null- Throws:
java.io.IOException
- if an I/O error occurs
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write
void write(java.io.OutputStream outputStream, Fastq... fastq) throws java.io.IOException
Write the specified FASTQ formatted sequences to the specified output stream.- Parameters:
outputStream
- output stream to write to, must not be nullfastq
- variable number of FASTQ formatted sequences to write, must not be null- Throws:
java.io.IOException
- if an I/O error occurs
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write
void write(java.io.OutputStream outputStream, java.lang.Iterable<Fastq> fastq) throws java.io.IOException
Write the specified FASTQ formatted sequences to the specified output stream.- Parameters:
outputStream
- output stream to write to, must not be nullfastq
- zero or more FASTQ formatted sequences to write, must not be null- Throws:
java.io.IOException
- if an I/O error occurs
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