Package org.forester.archaeopteryx.tools
Class PhylogeneticInferrer
- java.lang.Object
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- org.forester.archaeopteryx.tools.RunnableProcess
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- org.forester.archaeopteryx.tools.PhylogeneticInferrer
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- All Implemented Interfaces:
java.lang.Runnable
public class PhylogeneticInferrer extends RunnableProcess
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Nested Class Summary
Nested Classes Modifier and Type Class Description static class
PhylogeneticInferrer.MSA_PRG
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Field Summary
Fields Modifier and Type Field Description static java.lang.String
MSA_FILE_SUFFIX
static java.lang.String
PWD_FILE_SUFFIX
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Constructor Summary
Constructors Constructor Description PhylogeneticInferrer(java.util.List<MolecularSequence> seqs, PhylogeneticInferenceOptions options, MainFrameApplication mf)
PhylogeneticInferrer(Msa msa, PhylogeneticInferenceOptions options, MainFrameApplication mf)
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description void
run()
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Methods inherited from class org.forester.archaeopteryx.tools.RunnableProcess
end, start
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Field Detail
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MSA_FILE_SUFFIX
public static final java.lang.String MSA_FILE_SUFFIX
- See Also:
- Constant Field Values
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PWD_FILE_SUFFIX
public static final java.lang.String PWD_FILE_SUFFIX
- See Also:
- Constant Field Values
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Constructor Detail
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PhylogeneticInferrer
public PhylogeneticInferrer(java.util.List<MolecularSequence> seqs, PhylogeneticInferenceOptions options, MainFrameApplication mf)
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PhylogeneticInferrer
public PhylogeneticInferrer(Msa msa, PhylogeneticInferenceOptions options, MainFrameApplication mf)
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