# WARNING: you should run this Makefile with the 
# '-i' option since Clustalw's return codes are random...

# Makefile, tests directory and samples by Catherine Letondal <letondal@pasteur.fr>

test:	align tree profile

align:	
	clustalw -infile=nuc.data
	clustalw -infile=nuc.data -output=PHYLIP
	clustalw -infile=nuc.data -tree

tree: align
	clustalw -infile=nuc.data -usetree=nuc.dnd

profile: align
	clustalw -infile=nuc2.data
	clustalw -profile -profile1=nuc.aln -profile2=nuc2.aln -outfile=profile.aln

clean:
	/bin/rm -f *.dnd *.aln *.ph *.phy

