vg
tools for working with variation graphs
Functions
autoindex_main.cpp File Reference
#include <getopt.h>
#include <iostream>
#include <htslib/hts.h>
#include <htslib/vcf.h>
#include "subcommand.hpp"
#include "index_registry.hpp"
#include "utility.hpp"

Functions

bool vcf_is_phased (const string &filepath)
 
void help_autoindex (char **argv)
 
int main_autoindex (int argc, char **argv)
 

Detailed Description

Defines the "vg autoindex" subcommand, which produces indexes needed for other subcommands

Function Documentation

◆ help_autoindex()

void help_autoindex ( char **  argv)

◆ main_autoindex()

int main_autoindex ( int  argc,
char **  argv 
)

◆ vcf_is_phased()

bool vcf_is_phased ( const string &  filepath)