Class GeneAnnotationReader


  • public class GeneAnnotationReader
    extends Object
    Load gene annotations into an OverlapDetector of Gene objects. Currently only refFlat format is accepted.
    • Constructor Detail

      • GeneAnnotationReader

        public GeneAnnotationReader()
    • Method Detail

      • loadRefFlat

        public static htsjdk.samtools.util.OverlapDetector<Gene> loadRefFlat​(File refFlatFile,
                                                                             htsjdk.samtools.SAMSequenceDictionary sequenceDictionary)