Class PrimaryAlignmentKey

  • All Implemented Interfaces:
    Comparable<PrimaryAlignmentKey>

    public final class PrimaryAlignmentKey
    extends Object
    implements Comparable<PrimaryAlignmentKey>
    It is useful to define a key such that the key will occur at most once among the primary alignments in a given file (assuming the file is valid). The read name + pairing status should be sufficient for this.