Package picard.vcf

Class GA4GHSchemeWithMissingAsHomRef


  • public class GA4GHSchemeWithMissingAsHomRef
    extends GenotypeConcordanceScheme
    The default scheme is derived from the GA4GH Benchmarking Work Group's proposed evaluation scheme. This scheme has been edited to count MISSING sites in the truth set differently for use with truth sets where the HOM_REF sites are not included in the data set. The MISSING truth sites are called like they are HOM_REF sites.
    • Constructor Detail

      • GA4GHSchemeWithMissingAsHomRef

        public GA4GHSchemeWithMissingAsHomRef()