Package picard.illumina.parser
Class ReadData
- java.lang.Object
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- picard.illumina.parser.ReadData
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public class ReadData extends Object
Data for a single end of a paired-end read, a barcode read, or for the entire read if not paired end.
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description byte[]
getBases()
byte[]
getQualities()
ReadType
getReadType()
void
setBases(byte[] bases)
void
setQualities(byte[] qualities)
void
setReadType(ReadType readType)
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Constructor Detail
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ReadData
public ReadData()
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ReadData
public ReadData(ReadType readType)
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Method Detail
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getBases
public byte[] getBases()
- Returns:
- ASCII byte representation of bases.
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setBases
public void setBases(byte[] bases)
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getQualities
public byte[] getQualities()
- Returns:
- Phred-binary scaled qualities. E.g. Q20 is the byte with value==20.
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setQualities
public void setQualities(byte[] qualities)
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getReadType
public ReadType getReadType()
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setReadType
public void setReadType(ReadType readType)
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