Package picard.arrays

Class CreateVerifyIDIntensityContaminationMetricsFile


  • @DocumentedFeature
    public class CreateVerifyIDIntensityContaminationMetricsFile
    extends CommandLineProgram
    A simple program to create a standard picard metrics file from the output of VerifyIDIntensity
    • Field Detail

      • INPUT

        @Argument(shortName="I",
                  doc="The output of VerifyIDIntensity(typically captured stdout).")
        public File INPUT
      • OUTPUT

        @Argument(shortName="O",
                  doc="Basename for the metrics file that will be written. Resulting file will be <OUTPUT>.verifyidintensity_metrics")
        public File OUTPUT
    • Constructor Detail

      • CreateVerifyIDIntensityContaminationMetricsFile

        public CreateVerifyIDIntensityContaminationMetricsFile()
    • Method Detail

      • doWork

        protected int doWork()
        Description copied from class: CommandLineProgram
        Do the work after command line has been parsed. RuntimeException may be thrown by this method, and are reported appropriately.
        Specified by:
        doWork in class CommandLineProgram
        Returns:
        program exit status.