Package htsjdk.samtools.util
Class Md5CalculatingInputStream
- java.lang.Object
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- java.io.InputStream
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- htsjdk.samtools.util.Md5CalculatingInputStream
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- All Implemented Interfaces:
Closeable
,AutoCloseable
public class Md5CalculatingInputStream extends InputStream
Class to generate an MD5 string for a file as it is being read
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Constructor Summary
Constructors Constructor Description Md5CalculatingInputStream(InputStream is, File digestFile)
Constructor that takes in the InputStream that we are wrapping and creates the MD5 MessageDigest
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description int
available()
void
close()
void
mark(int readlimit)
boolean
markSupported()
String
md5()
int
read()
int
read(byte[] b)
int
read(byte[] b, int off, int len)
void
reset()
long
skip(long n)
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Methods inherited from class java.io.InputStream
nullInputStream, readAllBytes, readNBytes, readNBytes, transferTo
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Constructor Detail
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Md5CalculatingInputStream
public Md5CalculatingInputStream(InputStream is, File digestFile)
Constructor that takes in the InputStream that we are wrapping and creates the MD5 MessageDigest
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Method Detail
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read
public int read() throws IOException
- Specified by:
read
in classInputStream
- Throws:
IOException
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read
public int read(byte[] b) throws IOException
- Overrides:
read
in classInputStream
- Throws:
IOException
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read
public int read(byte[] b, int off, int len) throws IOException
- Overrides:
read
in classInputStream
- Throws:
IOException
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md5
public String md5()
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close
public void close() throws IOException
- Specified by:
close
in interfaceAutoCloseable
- Specified by:
close
in interfaceCloseable
- Overrides:
close
in classInputStream
- Throws:
IOException
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markSupported
public boolean markSupported()
- Overrides:
markSupported
in classInputStream
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mark
public void mark(int readlimit)
- Overrides:
mark
in classInputStream
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reset
public void reset() throws IOException
- Overrides:
reset
in classInputStream
- Throws:
IOException
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skip
public long skip(long n) throws IOException
- Overrides:
skip
in classInputStream
- Throws:
IOException
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available
public int available() throws IOException
- Overrides:
available
in classInputStream
- Throws:
IOException
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