Class DataSeriesReader<T>
- java.lang.Object
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- htsjdk.samtools.cram.encoding.reader.DataSeriesReader<T>
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- Type Parameters:
T
- data type of the series to be read.
public class DataSeriesReader<T> extends Object
A CRAM Data Series reader for a particular Encoding, DataSeriesType and associated parameters
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Constructor Summary
Constructors Constructor Description DataSeriesReader(DataSeriesType valueType, EncodingParams params, BitInputStream bitInputStream, Map<Integer,ByteArrayInputStream> inputMap)
Initialize a Data Series reader
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Constructor Detail
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DataSeriesReader
public DataSeriesReader(DataSeriesType valueType, EncodingParams params, BitInputStream bitInputStream, Map<Integer,ByteArrayInputStream> inputMap)
Initialize a Data Series reader- Parameters:
valueType
- type of the data to readparams
- encoding-specific parametersbitInputStream
- Core data block bit stream, to be read by non-external EncodingsinputMap
- External data block byte stream map, to be read by external Encodings
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