Package picard.vcf

Class GatherVcfs


  • @DocumentedFeature
    public class GatherVcfs
    extends CommandLineProgram
    Simple little class that combines multiple VCFs that have exactly the same set of samples and totally discrete sets of loci.
    • Field Detail

      • INPUT

        @Argument(shortName="I",
                  doc="Input VCF file(s).")
        public List<File> INPUT
      • OUTPUT

        @Argument(shortName="O",
                  doc="Output VCF file.")
        public File OUTPUT
    • Constructor Detail

      • GatherVcfs

        public GatherVcfs()
    • Method Detail

      • main

        public static void main​(String[] args)
      • doWork

        protected int doWork()
        Description copied from class: CommandLineProgram
        Do the work after command line has been parsed. RuntimeException may be thrown by this method, and are reported appropriately.
        Specified by:
        doWork in class CommandLineProgram
        Returns:
        program exit status.