Class CrosscheckMetric

  • Direct Known Subclasses:
    ClusteredCrosscheckMetric

    public class CrosscheckMetric
    extends htsjdk.samtools.metrics.MetricBase
    A class to hold the result of crosschecking fingerprints. The same metric will be used for crosschecking Readgroups, libraries, samples, or files.
    • Field Detail

      • LEFT_GROUP_VALUE

        public String LEFT_GROUP_VALUE
      • RIGHT_GROUP_VALUE

        public String RIGHT_GROUP_VALUE
      • LOD_SCORE

        public Double LOD_SCORE
      • LOD_SCORE_TUMOR_NORMAL

        public Double LOD_SCORE_TUMOR_NORMAL
      • LOD_SCORE_NORMAL_TUMOR

        public Double LOD_SCORE_NORMAL_TUMOR
      • LEFT_RUN_BARCODE

        public String LEFT_RUN_BARCODE
      • LEFT_LANE

        public Integer LEFT_LANE
      • LEFT_MOLECULAR_BARCODE_SEQUENCE

        public String LEFT_MOLECULAR_BARCODE_SEQUENCE
      • LEFT_LIBRARY

        public String LEFT_LIBRARY
      • LEFT_SAMPLE

        public String LEFT_SAMPLE
      • LEFT_FILE

        public String LEFT_FILE
      • RIGHT_RUN_BARCODE

        public String RIGHT_RUN_BARCODE
      • RIGHT_LANE

        public Integer RIGHT_LANE
      • RIGHT_MOLECULAR_BARCODE_SEQUENCE

        public String RIGHT_MOLECULAR_BARCODE_SEQUENCE
      • RIGHT_LIBRARY

        public String RIGHT_LIBRARY
      • RIGHT_SAMPLE

        public String RIGHT_SAMPLE
      • RIGHT_FILE

        public String RIGHT_FILE
    • Constructor Detail

      • CrosscheckMetric

        public CrosscheckMetric()