Package htsjdk.tribble
-
Interface Summary Interface Description CloseableTribbleIterator<T extends Feature> The basic iterator we use in Tribble, which allows closing and basic iteration.Feature Marker interface for Locatables with Tribble support.FeatureCodec<FEATURE_TYPE extends Feature,SOURCE> The base interface for classes that read in features.FeatureReader<T extends Feature> the basic interface that feature sources need to matchNameAwareCodec Created by IntelliJ IDEA. -
Class Summary Class Description AbstractFeatureCodec<FEATURE_TYPE extends Feature,SOURCE> Simple basic class providing much of the basic functionality of codecs Every concrete subclass must implementFeatureCodec.canDecode(String)
to indicate whether it can decode the file.AbstractFeatureReader<T extends Feature,SOURCE> jrobinsoAbstractFeatureReader.ComponentMethods AsciiFeatureCodec<T extends Feature> A convenience base class for codecs that want to read in features from ASCII lines.BinaryFeatureCodec<T extends Feature> Implements common methods ofFeatureCodec
s that read fromPositionalBufferedStream
s.FeatureCodecHeader A class to represent a header of a feature containing file.SimpleFeature A simple concrete Feature.TabixFeatureReader<T extends Feature,SOURCE> Tribble Common, tribble wide constants and static functionsTribbleIndexedFeatureReader<T extends Feature,SOURCE> A reader for text feature files (i.e.