Package htsjdk.tribble.index
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Interface Summary Interface Description ChrIndex Represents an index on a specific chromosomeIndex Interface for all index implementations.IndexCreator An interface for creating indexesMutableIndex Some Index implementations can be modified in memory. -
Class Summary Class Description AbstractIndex An abstract implementation of the index class.AbstractIndex.BlockStats Block Represents a contiguous block of bytes in a file, defined by a start position and size (in bytes)DynamicIndexCreator A DynamicIndexCreator creates the proper index based on anIndexFactory.IndexBalanceApproach
and the characteristics of the file.IndexFactory Factory class for creating indexes.TribbleIndexCreator Base class for Tribble-specific index creators. -
Enum Summary Enum Description AbstractIndex.IndexType IndexFactory.IndexBalanceApproach We can optimize index-file-creation for different factors.IndexFactory.IndexType an enum that contains all of the information about the index types, and how to create them