Package htsjdk.samtools.sra
Class SRAUnalignmentIterator
- java.lang.Object
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- htsjdk.samtools.sra.SRAUnalignmentIterator
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Constructor Summary
Constructors Constructor Description SRAUnalignmentIterator(SRAAccession accession, ngs.ReadCollection run, SAMFileHeader header, SRAIterator.RecordRangeInfo recordRangeInfo, Chunk chunk)
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description boolean
hasNext()
SAMRecord
next()
void
remove()
void
setValidationStringency(ValidationStringency validationStringency)
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Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
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Methods inherited from interface java.util.Iterator
forEachRemaining
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Constructor Detail
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SRAUnalignmentIterator
public SRAUnalignmentIterator(SRAAccession accession, ngs.ReadCollection run, SAMFileHeader header, SRAIterator.RecordRangeInfo recordRangeInfo, Chunk chunk)
- Parameters:
run
- opened read collectionheader
- sam headerrecordRangeInfo
- info about record ranges withing SRA archivechunk
- used to determine which unaligned reads the iterator should return
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Method Detail
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setValidationStringency
public void setValidationStringency(ValidationStringency validationStringency)
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