Package htsjdk.samtools.cram.lossy
Class BaseCategory
- java.lang.Object
-
- htsjdk.samtools.cram.lossy.BaseCategory
-
public class BaseCategory extends Object
-
-
Field Summary
Fields Modifier and Type Field Description int
param
BaseCategoryType
type
-
Method Summary
All Methods Static Methods Instance Methods Concrete Methods Modifier and Type Method Description static BaseCategory
flankingDeletion()
static BaseCategory
insertion()
static BaseCategory
lowerThanCoverage(int coverage)
static BaseCategory
match()
static BaseCategory
mismatch()
static BaseCategory
pileup(int threshold)
String
toString()
-
-
-
Field Detail
-
type
public final BaseCategoryType type
-
param
public final int param
-
-
Method Detail
-
match
public static BaseCategory match()
-
mismatch
public static BaseCategory mismatch()
-
flankingDeletion
public static BaseCategory flankingDeletion()
-
pileup
public static BaseCategory pileup(int threshold)
-
lowerThanCoverage
public static BaseCategory lowerThanCoverage(int coverage)
-
insertion
public static BaseCategory insertion()
-
-