Package htsjdk.samtools.cram.structure
Class SubstitutionMatrix
- java.lang.Object
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- htsjdk.samtools.cram.structure.SubstitutionMatrix
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public class SubstitutionMatrix extends Object
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Field Summary
Fields Modifier and Type Field Description static byte[]
BASES
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Constructor Summary
Constructors Constructor Description SubstitutionMatrix(byte[] matrix)
SubstitutionMatrix(long[][] frequencies)
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description byte
base(byte refBase, byte code)
byte
code(byte refBase, byte readBase)
byte[]
getEncodedMatrix()
String
toString()
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