Class SAMTextWriter

    • Constructor Detail

      • SAMTextWriter

        public SAMTextWriter​(Writer out)
        Constructs a SAMTextWriter that outputs to a Writer.
        Parameters:
        out - Writer.
      • SAMTextWriter

        public SAMTextWriter​(File file)
        Constructs a SAMTextWriter that writes to a File.
        Parameters:
        file - Where to write the output.
      • SAMTextWriter

        public SAMTextWriter​(OutputStream stream)
        Constructs a SAMTextWriter that writes to an OutputStream. The OutputStream is wrapped in an AsciiWriter, which can be retrieved with getWriter().
        Parameters:
        stream - Need not be buffered because this class provides buffering.
      • SAMTextWriter

        public SAMTextWriter​(Writer out,
                             SamFlagField samFlagFieldOutput)
        Constructs a SAMTextWriter that outputs to a Writer.
        Parameters:
        out - Writer.
      • SAMTextWriter

        public SAMTextWriter​(File file,
                             SamFlagField samFlagFieldOutput)
        Constructs a SAMTextWriter that writes to a File.
        Parameters:
        file - Where to write the output.
      • SAMTextWriter

        public SAMTextWriter​(OutputStream stream,
                             SamFlagField samFlagFieldOutput)
        Constructs a SAMTextWriter that writes to an OutputStream. The OutputStream is wrapped in an AsciiWriter, which can be retrieved with getWriter().
        Parameters:
        stream - Need not be buffered because this class provides buffering.