Package htsjdk.variant.bcf2
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Interface Summary Interface Description BCF2GenotypeFieldDecoders.Decoder Decoder a field (implicit from creation) encoded as typeDescriptor in the decoder object in the GenotypeBuilders one for each sample in order. -
Class Summary Class Description BCF2Codec Decode BCF2 filesBCF2Codec.LazyData BCF2Codec.SitesInfoForDecoding BCF2Decoder BCF2GenotypeFieldDecoders An efficient scheme for building and obtaining specialized genotype field decoders.BCF2LazyGenotypesDecoder Lazy version of genotypes decoder for BCF2 genotypesBCF2Utils Common utilities for working with BCF2 files Includes convenience methods for encoding, decoding BCF2 type descriptors (size + type)BCFVersion Simple holder for BCF version information User: depristo Date: 8/2/12 Time: 2:16 PM -
Enum Summary Enum Description BCF2Type BCF2 types and associated information