AbstractVCFCodec |
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VCF3Codec |
A feature codec for the VCF3 specification, to read older VCF files.
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VCFCodec |
A feature codec for the VCF 4 specification
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VCFCompoundHeaderLine |
a base class for compound header lines, which include info lines and format lines (so far)
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VCFConstants |
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VCFContigHeaderLine |
A special class representing a contig VCF header line.
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VCFEncoder |
Functions specific to encoding VCF records.
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VCFFileReader |
Simplified interface for reading from VCF/BCF files.
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VCFFilterHeaderLine |
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VCFFormatHeaderLine |
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VCFHeader |
A class to represent a VCF header
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VCFHeaderLine |
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VCFHeaderLineTranslator |
A class for translating between vcf header versions
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VCFInfoHeaderLine |
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VCFIteratorBuilder |
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VCFRecordCodec |
Writes VariantContext instances to an OutputStream without headers or metadata.
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VCFSimpleHeaderLine |
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VCFStandardHeaderLines |
Manages header lines for standard VCF
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VCFUtils |
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