Class RawRGBToDicomMultiFrame


  • public class RawRGBToDicomMultiFrame
    extends java.lang.Object

    A class for converting raw RGB color single frame image input format files (such as from Visible Human) into one or more DICOM multi-frame secondary capture images.

    • Constructor Summary

      Constructors 
      Constructor Description
      RawRGBToDicomMultiFrame​(java.lang.String formatFileName, java.lang.String inputFolderName, java.lang.String inputFileNameSuffix, java.lang.String outputFolderName, java.lang.String patientName, java.lang.String patientID, java.lang.String studyID, java.lang.String seriesNumber)
      Read raw RGB color single frame image input format files (such as from Visible Human) into one or more DICOM multi-frame secondary capture images.
    • Constructor Detail

      • RawRGBToDicomMultiFrame

        public RawRGBToDicomMultiFrame​(java.lang.String formatFileName,
                                       java.lang.String inputFolderName,
                                       java.lang.String inputFileNameSuffix,
                                       java.lang.String outputFolderName,
                                       java.lang.String patientName,
                                       java.lang.String patientID,
                                       java.lang.String studyID,
                                       java.lang.String seriesNumber)
                                throws java.io.IOException,
                                       DicomException

        Read raw RGB color single frame image input format files (such as from Visible Human) into one or more DICOM multi-frame secondary capture images.

        Will obtain the description of the geometry of the raw RGB files, e.g., a Visible Human README file, from the specified format description file.

        The order of the frames is assumed to be by their lexicographically sorted file name (hence numeric file names need to be the same length, e.g., zero-padded.

        Parameters:
        formatFileName -
        inputFolderName -
        inputFileNameSuffix -
        outputFolderName -
        patientName -
        patientID -
        studyID -
        seriesNumber -
        Throws:
        java.io.IOException
        DicomException
    • Method Detail

      • generateGeometryFunctionalGroupsFromRawRGBInformation

        public static AttributeList generateGeometryFunctionalGroupsFromRawRGBInformation​(RawRGBInformation rawRGBInfo,
                                                                                          AttributeList list,
                                                                                          int numberOfFrames)
                                                                                   throws DicomException

        Read a per-frame and shared functional group sequences for the geometry defined in a raw image file description.

        Parameters:
        rawRGBInfo - description of the size of the raw image
        list - an existing (possibly empty) attribute list, if null, a new one will be created; may already shared and per-frame functional group sequences or they will be added
        numberOfFrames - return attribute list with per-frame and shared functional group sequences for geometry added
        Throws:
        DicomException
      • generateDICOMPixelDataModuleAttributesFromRawRGBFiles

        public static AttributeList generateDICOMPixelDataModuleAttributesFromRawRGBFiles​(java.lang.String[] inputFileNames,
                                                                                          java.lang.String inputFileNameSuffix,
                                                                                          RawRGBInformation rawRGBInfo,
                                                                                          AttributeList list)
                                                                                   throws java.io.IOException,
                                                                                          DicomException

        Create DICOM Pixel Data Module attributes.

        Parameters:
        inputFileNames - the single frame raw RGB format image files sorted in the correct order
        inputFileNameSuffix - so we can tell whether or not the input files are compressed
        rawRGBInfo - description of the size of the raw image already read from the inputFile
        list - an existing (possibly empty) attribute list, if null, a new one will be created; may already include "better" image pixel module attributes to use return attribute list with Image Pixel Module (including Pixel Data) and other attributes added
        Throws:
        java.io.IOException
        DicomException
      • getSortedInputFileNames

        protected static java.lang.String[] getSortedInputFileNames​(java.lang.String inputFolderName,
                                                                    java.lang.String inputFileNameSuffix)
                                                             throws java.io.IOException
        Throws:
        java.io.IOException
      • main

        public static void main​(java.lang.String[] arg)

        Read raw RGB color single frame image input format files (such as from Visible Human) into one or more DICOM multi-frame secondary capture images.

        Will obtain the description of the geometry of the raw RGB files, e.g., a Visible Human README file, from the specified format description file.

        Parameters:
        arg - eight parameters, the format description file, inputFolder, inputFileNameSuffix, outputFolder, patientName, patientID, studyID, seriesNumber