Package | Description |
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jebl.evolution.align |
Provides classes and interfaces for pairwise alignment of two sequences.
|
Modifier and Type | Class | Description |
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class |
SystemOut |
Modifier and Type | Method | Description |
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void |
Align.doMatch(Output out,
java.lang.String msg) |
Print the score and the alignment
|
void |
Align.doMatch(Output out,
java.lang.String msg,
boolean outputFMatrix) |
Print the score, the F matrix, and the alignment
|
abstract void |
Align.printf(Output out) |
Print the matrix (matrices) used to compute the alignment
|
void |
NonOverlapMultipleLocalAffine.printf(Output out) |
Print matrix used to calculate this alignment.
|
http://code.google.com/p/jebl2/