Package | Description |
---|---|
jebl.evolution.align |
Provides classes and interfaces for pairwise alignment of two sequences.
|
jebl.evolution.io | |
jebl.evolution.trees |
Class | Description |
---|---|
ImportException |
Class | Description |
---|---|
AlignmentExporter | |
AlignmentImporter | |
ByteBuilder |
Similar to a StringBuilder, but its internal buffer is a byte[] with
one entry for each character, so it can only correctly append single-byte
characters.
|
DistanceMatrixImporter | |
DistanceMatrixImporter.Triangle | |
IllegalCharacterPolicy |
What to do when an imported document contains illegal characters
|
ImmediateSequenceImporter |
A sequence importer sending the sequences back one by one, which makes it
possible to import larger documents if handled wisely on the other side.
|
ImmediateSequenceImporter.Callback | |
ImportException | |
NexusImporter.NexusBlock |
Represents the block types used in the nexus format
|
SequenceExporter | |
SequenceImporter |
Interface for importers that do sequences
|
TreeExporter | |
TreeImporter |
Interface for importers that do trees
|
Class | Description |
---|---|
ImportException | |
NexusImporter |
Class for importing NEXUS file format.
|
http://code.google.com/p/jebl2/