Method | Description |
---|---|
jebl.evolution.io.ImportHelper.getLastMetaComment() |
use
ImportHelper.getMetaComments() instead |
jebl.evolution.io.MEGAExporter.exportAlignment(Alignment) |
Files created by this export method won't be importable by MEGA (because they don't have titles). Use
MEGAExporter.exportAlignment(jebl.evolution.alignments.Alignment, String) instead. |
jebl.evolution.sequences.GeneticCode.isStartCodon(CodonState) | |
jebl.evolution.sequences.GeneticCode.isStopCodon(CodonState) | |
jebl.evolution.sequences.State.getName() |
you probably want to use
State.getFullName() or State.getCode() . |
Constructor | Description |
---|---|
jebl.evolution.io.NexusImporter(Reader, boolean) |
Use NexusImporter(Reader reader, boolean compactTrees, long expectedInputLength)
|
http://code.google.com/p/jebl2/