Package | Description |
---|---|
jebl.evolution.graphs | |
jebl.evolution.trees |
Modifier and Type | Method | Description |
---|---|---|
Edge |
Graph.getEdge(Node node1,
Node node2) |
Returns the Edge that connects these two nodes
|
double |
Graph.getEdgeLength(Node node1,
Node node2) |
Returns the length of the edge that connects these two nodes
|
Modifier and Type | Method | Description |
---|---|---|
Node |
SimpleRootedTree.createNodes(Tree tree,
Node parent,
Node child) |
Clones the entire tree structure from the given (unrooted) Tree.
|
Edge |
CompactRootedTree.getEdge(Node node1,
Node node2) |
|
Edge |
FilteredRootedTree.getEdge(Node node1,
Node node2) |
|
Edge |
MutableRootedTree.getEdge(Node node1,
Node node2) |
Returns the Edge that connects these two nodes
|
Edge |
RootedFromUnrooted.getEdge(Node node1,
Node node2) |
|
Edge |
RootedSubtree.getEdge(Node node1,
Node node2) |
Returns the Edge that connects these two nodes
|
Edge |
SimpleRootedTree.getEdge(Node node1,
Node node2) |
Returns the Edge that connects these two nodes
|
Edge |
SimpleTree.getEdge(Node node1,
Node node2) |
Returns the Edge that connects these two nodes
|
double |
CompactRootedTree.getEdgeLength(Node node1,
Node node2) |
|
double |
FilteredRootedTree.getEdgeLength(Node node1,
Node node2) |
|
double |
MutableRootedTree.getEdgeLength(Node node1,
Node node2) |
|
double |
RootedFromUnrooted.getEdgeLength(Node node1,
Node node2) |
|
double |
RootedSubtree.getEdgeLength(Node node1,
Node node2) |
|
double |
SimpleRootedTree.getEdgeLength(Node node1,
Node node2) |
|
double |
SimpleTree.getEdgeLength(Node node1,
Node node2) |
Constructor | Description |
---|---|
SimpleRootedTree(Tree tree,
Node ingroupNode,
Node outgroupNode,
double ingroupBranchLength) |
Make a copy of the given unrooted tree
|
http://code.google.com/p/jebl2/