Package | Description |
---|---|
jebl.evolution.align |
Provides classes and interfaces for pairwise alignment of two sequences.
|
jebl.evolution.distances |
Modifier and Type | Class | Description |
---|---|---|
class |
SequenceAlignmentsDistanceMatrix |
Builds a distance matrix by performing a series of pairwise alignments between the
specified sequences (unlike the methods in jebl.evolution.distances, which
extract the pairwise distances from a multiple sequence alignment).
|
Modifier and Type | Class | Description |
---|---|---|
class |
F84DistanceMatrix |
|
class |
HKYDistanceMatrix |
Compute HKY corrected distance matrix
|
class |
JukesCantorDistanceMatrix |
Compute jukes-cantor corrected distance matrix for a set of aligned sequences.
|
class |
TamuraNeiDistanceMatrix |
Date: 22/01/2006
Time: 17:28:59
|
http://code.google.com/p/jebl2/