DistanceMatrix
public class JukesCantorDistanceMatrix extends BasicDistanceMatrix
Constructor | Description |
---|---|
JukesCantorDistanceMatrix(Alignment alignment,
ProgressListener progress) |
|
JukesCantorDistanceMatrix(Alignment alignment,
ProgressListener progress,
boolean useTwiceMaximumDistanceWhenPairwiseDistanceNotCalculatable) |
getDistance, getDistance, getDistances, getSize, getSubmatrix, getTaxa
public JukesCantorDistanceMatrix(Alignment alignment, ProgressListener progress) throws CannotBuildDistanceMatrixException
public JukesCantorDistanceMatrix(Alignment alignment, ProgressListener progress, boolean useTwiceMaximumDistanceWhenPairwiseDistanceNotCalculatable) throws CannotBuildDistanceMatrixException
http://code.google.com/p/jebl2/