Package | Description |
---|---|
jebl.evolution.align |
Provides classes and interfaces for pairwise alignment of two sequences.
|
Modifier and Type | Class | Description |
---|---|---|
class |
MaximalSegmentPair |
|
class |
NeedlemanWunsch |
|
class |
NeedlemanWunschAffine |
|
class |
NeedlemanWunschLinearSpace |
|
class |
NeedlemanWunschLinearSpaceAffine |
|
class |
NonOverlapMultipleLocalAffine |
Performs recursive local alignments.
|
class |
OldNeedlemanWunschAffine |
|
class |
OverlapAlign |
|
class |
SmithWaterman |
|
class |
SmithWatermanLinearSpace |
|
class |
SmithWatermanLinearSpaceAffine |
Modifier and Type | Method | Description |
---|---|---|
void |
SequenceShuffler.shuffle(Align algorithm,
java.lang.String sq1,
java.lang.String sq2,
int numShuffles) |
http://code.google.com/p/jebl2/