java.lang.Comparable
, Sequence
, Attributable
public class TranslatedSequence extends FilteredSequence
Attributable.Utils
Constructor | Description |
---|---|
TranslatedSequence(Sequence source,
GeneticCode geneticCode) |
Create a TranslatedSequence from a source codon or nucleotide sequence
|
TranslatedSequence(Sequence source,
GeneticCode geneticCode,
int frame) |
Create a TranslatedSequence from a source codon or nucleotide sequence
|
Modifier and Type | Method | Description |
---|---|---|
SequenceType |
getSequenceType() |
compareTo, getAttribute, getAttributeMap, getAttributeNames, getLength, getState, getStateIndices, getStates, getString, getTaxon, removeAttribute, setAttribute, toString
equals, getClass, hashCode, notify, notifyAll, wait, wait, wait
public TranslatedSequence(Sequence source, GeneticCode geneticCode)
source
- geneticCode
- public TranslatedSequence(Sequence source, GeneticCode geneticCode, int frame)
source
- geneticCode
- frame
- indexed from 1public SequenceType getSequenceType()
getSequenceType
in interface Sequence
getSequenceType
in class FilteredSequence
http://code.google.com/p/jebl2/