Class GFF3FromUniprotBlastHits


  • public class GFF3FromUniprotBlastHits
    extends java.lang.Object
    Author:
    Scooter Willis , Mark Chapman
    • Method Summary

      All Methods Static Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      static void main​(java.lang.String[] args)  
      void process​(java.io.File xmlBlastHits, double ecutoff, java.util.LinkedHashMap<java.lang.String,​GeneSequence> geneSequenceHashMap, java.io.OutputStream gff3Output)  
      void process​(java.util.LinkedHashMap<java.lang.String,​java.util.ArrayList<java.lang.String>> hits, java.util.LinkedHashMap<java.lang.String,​GeneSequence> geneSequenceHashMap, java.io.OutputStream gff3Output)  
      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
    • Constructor Detail

      • GFF3FromUniprotBlastHits

        public GFF3FromUniprotBlastHits()
    • Method Detail

      • process

        public void process​(java.io.File xmlBlastHits,
                            double ecutoff,
                            java.util.LinkedHashMap<java.lang.String,​GeneSequence> geneSequenceHashMap,
                            java.io.OutputStream gff3Output)
                     throws java.lang.Exception
        Throws:
        java.lang.Exception
      • process

        public void process​(java.util.LinkedHashMap<java.lang.String,​java.util.ArrayList<java.lang.String>> hits,
                            java.util.LinkedHashMap<java.lang.String,​GeneSequence> geneSequenceHashMap,
                            java.io.OutputStream gff3Output)
                     throws java.lang.Exception
        Throws:
        java.lang.Exception
      • main

        public static void main​(java.lang.String[] args)