Class DomainCountsDifferenceUtil


  • public final class DomainCountsDifferenceUtil
    extends java.lang.Object
    • Method Summary

      All Methods Static Methods Concrete Methods 
      Modifier and Type Method Description
      static void calculateCopyNumberDifferences​(java.util.List<GenomeWideCombinableDomains> genomes, java.util.SortedMap<Species,​java.util.List<Protein>> protein_lists_per_species, java.util.List<java.lang.String> high_copy_base_species, java.util.List<java.lang.String> high_copy_target_species, java.util.List<java.lang.String> low_copy_species, int min_diff, java.lang.Double factor, java.io.File plain_output_dom, java.io.File html_output_dom, java.io.File html_output_dc, java.util.Map<java.lang.String,​java.util.List<GoId>> domain_id_to_go_ids_map, java.util.Map<GoId,​GoTerm> go_id_to_term_map, java.io.File all_domains_go_ids_out_dom, java.io.File passing_domains_go_ids_out_dom, java.io.File proteins_file_base)  
      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
    • Constructor Detail

      • DomainCountsDifferenceUtil

        public DomainCountsDifferenceUtil()
    • Method Detail

      • calculateCopyNumberDifferences

        public static void calculateCopyNumberDifferences​(java.util.List<GenomeWideCombinableDomains> genomes,
                                                          java.util.SortedMap<Species,​java.util.List<Protein>> protein_lists_per_species,
                                                          java.util.List<java.lang.String> high_copy_base_species,
                                                          java.util.List<java.lang.String> high_copy_target_species,
                                                          java.util.List<java.lang.String> low_copy_species,
                                                          int min_diff,
                                                          java.lang.Double factor,
                                                          java.io.File plain_output_dom,
                                                          java.io.File html_output_dom,
                                                          java.io.File html_output_dc,
                                                          java.util.Map<java.lang.String,​java.util.List<GoId>> domain_id_to_go_ids_map,
                                                          java.util.Map<GoId,​GoTerm> go_id_to_term_map,
                                                          java.io.File all_domains_go_ids_out_dom,
                                                          java.io.File passing_domains_go_ids_out_dom,
                                                          java.io.File proteins_file_base)
                                                   throws java.io.IOException
        Throws:
        java.io.IOException