Class OutputHitsGFF


  • public class OutputHitsGFF
    extends java.lang.Object
    Author:
    Scooter Willis
    • Constructor Summary

      Constructors 
      Constructor Description
      OutputHitsGFF()  
    • Method Summary

      All Methods Static Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      static void main​(java.lang.String[] args)  
      void process​(java.io.File blastXMLFile, java.io.File gffFile, java.io.File gffOutputFile, double maxEScore, double percentageAligned, boolean includeFrameShift, boolean includeNegativeStrand)  
      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
    • Constructor Detail

      • OutputHitsGFF

        public OutputHitsGFF()
    • Method Detail

      • process

        public void process​(java.io.File blastXMLFile,
                            java.io.File gffFile,
                            java.io.File gffOutputFile,
                            double maxEScore,
                            double percentageAligned,
                            boolean includeFrameShift,
                            boolean includeNegativeStrand)
                     throws java.lang.Exception
        Throws:
        java.lang.Exception
      • main

        public static void main​(java.lang.String[] args)