Class Refine
- java.lang.Object
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- org.biojava.bio.structure.io.mmcif.model.Refine
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public class Refine extends java.lang.Object
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Constructor Summary
Constructors Constructor Description Refine()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description java.lang.String[][]
getAniso_B()
java.lang.String
getB_iso_max()
java.lang.String
getB_iso_mean()
java.lang.String
getB_iso_min()
java.lang.String
getCorrelation_coeff_Fo_to_Fc()
java.lang.String
getCorrelation_coeff_Fo_to_Fc_free()
java.lang.String
getDetails()
java.lang.String
getEntry_id()
java.lang.String
getLs_d_res_high()
java.lang.String
getLs_d_res_low()
java.lang.String
getLs_number_parameters()
java.lang.String
getLs_number_reflns_all()
java.lang.String
getLs_number_reflns_obs()
java.lang.String
getLs_number_reflns_R_free()
java.lang.String
getLs_number_restraints()
java.lang.String
getLs_percent_reflns_obs()
java.lang.String
getLs_percent_reflns_R_free()
java.lang.String
getLs_R_factor_all()
java.lang.String
getLs_R_factor_obs()
java.lang.String
getLs_R_factor_R_free()
java.lang.String
getLs_R_factor_R_free_error()
java.lang.String
getLs_R_factor_R_free_error_details()
java.lang.String
getLs_R_factor_R_work()
java.lang.String
getLs_redundancy_reflns_obs()
java.lang.String
getLs_wR_factor_R_free()
java.lang.String
getLs_wR_factor_R_work()
java.lang.String
getOccupancy_max()
java.lang.String
getOccupancy_min()
java.lang.String
getOverall_FOM_free_R_set()
java.lang.String
getOverall_FOM_work_R_set()
java.lang.String
getOverall_SU_B()
java.lang.String
getOverall_SU_ML()
java.lang.String
getOverall_SU_R_Cruickshank_DPI()
java.lang.String
getOverall_SU_R_free()
java.lang.String
getPdbx_data_cutoff_high_absF()
java.lang.String
getPdbx_data_cutoff_high_rms_absF()
java.lang.String
getPdbx_data_cutoff_low_absF()
java.lang.String
getPdbx_isotropic_thermal_model()
java.lang.String
getPdbx_ls_cross_valid_method()
java.lang.String
getPdbx_ls_sigma_F()
java.lang.String
getPdbx_ls_sigma_I()
java.lang.String
getPdbx_method_to_determine_struct()
java.lang.String
getPdbx_overall_ESU_R()
java.lang.String
getPdbx_overall_ESU_R_Free()
java.lang.String
getPdbx_overall_phase_error()
java.lang.String
getPdbx_R_Free_selection_details()
java.lang.String
getPdbx_refine_id()
java.lang.String
getPdbx_solvent_ion_probe_radii()
java.lang.String
getPdbx_solvent_shrinkage_radii()
java.lang.String
getPdbx_solvent_vdw_probe_radii()
java.lang.String
getPdbx_starting_model()
java.lang.String
getPdbx_stereochem_target_val_spec_case()
java.lang.String
getPdbx_stereochemistry_target_values()
java.lang.String
getSolvent_model_details()
java.lang.String
getSolvent_model_param_bsol()
java.lang.String
getSolvent_model_param_ksol()
void
setAniso_B(java.lang.String[][] aniso_B)
void
setB_iso_max(java.lang.String b_iso_max)
void
setB_iso_mean(java.lang.String b_iso_mean)
void
setB_iso_min(java.lang.String b_iso_min)
void
setCorrelation_coeff_Fo_to_Fc(java.lang.String correlation_coeff_Fo_to_Fc)
void
setCorrelation_coeff_Fo_to_Fc_free(java.lang.String correlation_coeff_Fo_to_Fc_free)
void
setDetails(java.lang.String details)
void
setEntry_id(java.lang.String entry_id)
void
setLs_d_res_high(java.lang.String ls_d_res_high)
void
setLs_d_res_low(java.lang.String ls_d_res_low)
void
setLs_number_parameters(java.lang.String ls_number_parameters)
void
setLs_number_reflns_all(java.lang.String ls_number_reflns_all)
void
setLs_number_reflns_obs(java.lang.String ls_number_reflns_obs)
void
setLs_number_reflns_R_free(java.lang.String ls_number_reflns_R_free)
void
setLs_number_restraints(java.lang.String ls_number_restraints)
void
setLs_percent_reflns_obs(java.lang.String ls_percent_reflns_obs)
void
setLs_percent_reflns_R_free(java.lang.String ls_percent_reflns_R_free)
void
setLs_R_factor_all(java.lang.String ls_R_factor_all)
void
setLs_R_factor_obs(java.lang.String ls_R_factor_obs)
void
setLs_R_factor_R_free(java.lang.String ls_R_factor_R_free)
void
setLs_R_factor_R_free_error(java.lang.String ls_R_factor_R_free_error)
void
setLs_R_factor_R_free_error_details(java.lang.String ls_R_factor_R_free_error_details)
void
setLs_R_factor_R_work(java.lang.String ls_R_factor_R_work)
void
setLs_redundancy_reflns_obs(java.lang.String ls_redundancy_reflns_obs)
void
setLs_wR_factor_R_free(java.lang.String ls_wR_factor_R_free)
void
setLs_wR_factor_R_work(java.lang.String ls_wR_factor_R_work)
void
setOccupancy_max(java.lang.String occupancy_max)
void
setOccupancy_min(java.lang.String occupancy_min)
void
setOverall_FOM_free_R_set(java.lang.String overall_FOM_free_R_set)
void
setOverall_FOM_work_R_set(java.lang.String overall_FOM_work_R_set)
void
setOverall_SU_B(java.lang.String overall_SU_B)
void
setOverall_SU_ML(java.lang.String overall_SU_ML)
void
setOverall_SU_R_Cruickshank_DPI(java.lang.String overall_SU_R_Cruickshank_DPI)
void
setOverall_SU_R_free(java.lang.String overall_SU_R_free)
void
setPdbx_data_cutoff_high_absF(java.lang.String pdbx_data_cutoff_high_absF)
void
setPdbx_data_cutoff_high_rms_absF(java.lang.String pdbx_data_cutoff_high_rms_absF)
void
setPdbx_data_cutoff_low_absF(java.lang.String pdbx_data_cutoff_low_absF)
void
setPdbx_isotropic_thermal_model(java.lang.String pdbx_isotropic_thermal_model)
void
setPdbx_ls_cross_valid_method(java.lang.String pdbx_ls_cross_valid_method)
void
setPdbx_ls_sigma_F(java.lang.String pdbx_ls_sigma_F)
void
setPdbx_ls_sigma_I(java.lang.String pdbx_ls_sigma_I)
void
setPdbx_method_to_determine_struct(java.lang.String pdbx_method_to_determine_struct)
void
setPdbx_overall_ESU_R(java.lang.String pdbx_overall_ESU_R)
void
setPdbx_overall_ESU_R_Free(java.lang.String pdbx_overall_ESU_R_Free)
void
setPdbx_overall_phase_error(java.lang.String pdbx_overall_phase_error)
void
setPdbx_R_Free_selection_details(java.lang.String pdbx_R_Free_selection_details)
void
setPdbx_refine_id(java.lang.String pdbx_refine_id)
void
setPdbx_solvent_ion_probe_radii(java.lang.String pdbx_solvent_ion_probe_radii)
void
setPdbx_solvent_shrinkage_radii(java.lang.String pdbx_solvent_shrinkage_radii)
void
setPdbx_solvent_vdw_probe_radii(java.lang.String pdbx_solvent_vdw_probe_radii)
void
setPdbx_starting_model(java.lang.String pdbx_starting_model)
void
setPdbx_stereochem_target_val_spec_case(java.lang.String pdbx_stereochem_target_val_spec_case)
void
setPdbx_stereochemistry_target_values(java.lang.String pdbx_stereochemistry_target_values)
void
setSolvent_model_details(java.lang.String solvent_model_details)
void
setSolvent_model_param_bsol(java.lang.String solvent_model_param_bsol)
void
setSolvent_model_param_ksol(java.lang.String solvent_model_param_ksol)
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Method Detail
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getEntry_id
public java.lang.String getEntry_id()
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setEntry_id
public void setEntry_id(java.lang.String entry_id)
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getLs_number_reflns_obs
public java.lang.String getLs_number_reflns_obs()
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setLs_number_reflns_obs
public void setLs_number_reflns_obs(java.lang.String ls_number_reflns_obs)
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getLs_number_reflns_all
public java.lang.String getLs_number_reflns_all()
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setLs_number_reflns_all
public void setLs_number_reflns_all(java.lang.String ls_number_reflns_all)
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getPdbx_ls_sigma_I
public java.lang.String getPdbx_ls_sigma_I()
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setPdbx_ls_sigma_I
public void setPdbx_ls_sigma_I(java.lang.String pdbx_ls_sigma_I)
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getPdbx_ls_sigma_F
public java.lang.String getPdbx_ls_sigma_F()
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setPdbx_ls_sigma_F
public void setPdbx_ls_sigma_F(java.lang.String pdbx_ls_sigma_F)
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getPdbx_data_cutoff_high_absF
public java.lang.String getPdbx_data_cutoff_high_absF()
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setPdbx_data_cutoff_high_absF
public void setPdbx_data_cutoff_high_absF(java.lang.String pdbx_data_cutoff_high_absF)
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getPdbx_data_cutoff_low_absF
public java.lang.String getPdbx_data_cutoff_low_absF()
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setPdbx_data_cutoff_low_absF
public void setPdbx_data_cutoff_low_absF(java.lang.String pdbx_data_cutoff_low_absF)
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getPdbx_data_cutoff_high_rms_absF
public java.lang.String getPdbx_data_cutoff_high_rms_absF()
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setPdbx_data_cutoff_high_rms_absF
public void setPdbx_data_cutoff_high_rms_absF(java.lang.String pdbx_data_cutoff_high_rms_absF)
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getLs_d_res_low
public java.lang.String getLs_d_res_low()
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setLs_d_res_low
public void setLs_d_res_low(java.lang.String ls_d_res_low)
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getLs_d_res_high
public java.lang.String getLs_d_res_high()
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setLs_d_res_high
public void setLs_d_res_high(java.lang.String ls_d_res_high)
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getLs_percent_reflns_obs
public java.lang.String getLs_percent_reflns_obs()
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setLs_percent_reflns_obs
public void setLs_percent_reflns_obs(java.lang.String ls_percent_reflns_obs)
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getLs_R_factor_obs
public java.lang.String getLs_R_factor_obs()
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setLs_R_factor_obs
public void setLs_R_factor_obs(java.lang.String ls_R_factor_obs)
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getLs_R_factor_all
public java.lang.String getLs_R_factor_all()
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setLs_R_factor_all
public void setLs_R_factor_all(java.lang.String ls_R_factor_all)
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getLs_R_factor_R_work
public java.lang.String getLs_R_factor_R_work()
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setLs_R_factor_R_work
public void setLs_R_factor_R_work(java.lang.String ls_R_factor_R_work)
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getLs_R_factor_R_free
public java.lang.String getLs_R_factor_R_free()
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setLs_R_factor_R_free
public void setLs_R_factor_R_free(java.lang.String ls_R_factor_R_free)
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getLs_R_factor_R_free_error
public java.lang.String getLs_R_factor_R_free_error()
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setLs_R_factor_R_free_error
public void setLs_R_factor_R_free_error(java.lang.String ls_R_factor_R_free_error)
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getLs_R_factor_R_free_error_details
public java.lang.String getLs_R_factor_R_free_error_details()
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setLs_R_factor_R_free_error_details
public void setLs_R_factor_R_free_error_details(java.lang.String ls_R_factor_R_free_error_details)
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getLs_percent_reflns_R_free
public java.lang.String getLs_percent_reflns_R_free()
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setLs_percent_reflns_R_free
public void setLs_percent_reflns_R_free(java.lang.String ls_percent_reflns_R_free)
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getLs_number_reflns_R_free
public java.lang.String getLs_number_reflns_R_free()
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setLs_number_reflns_R_free
public void setLs_number_reflns_R_free(java.lang.String ls_number_reflns_R_free)
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getLs_number_parameters
public java.lang.String getLs_number_parameters()
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setLs_number_parameters
public void setLs_number_parameters(java.lang.String ls_number_parameters)
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getLs_number_restraints
public java.lang.String getLs_number_restraints()
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setLs_number_restraints
public void setLs_number_restraints(java.lang.String ls_number_restraints)
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getOccupancy_min
public java.lang.String getOccupancy_min()
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setOccupancy_min
public void setOccupancy_min(java.lang.String occupancy_min)
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getOccupancy_max
public java.lang.String getOccupancy_max()
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setOccupancy_max
public void setOccupancy_max(java.lang.String occupancy_max)
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getB_iso_mean
public java.lang.String getB_iso_mean()
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setB_iso_mean
public void setB_iso_mean(java.lang.String b_iso_mean)
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getAniso_B
public java.lang.String[][] getAniso_B()
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setAniso_B
public void setAniso_B(java.lang.String[][] aniso_B)
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getSolvent_model_details
public java.lang.String getSolvent_model_details()
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setSolvent_model_details
public void setSolvent_model_details(java.lang.String solvent_model_details)
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getSolvent_model_param_ksol
public java.lang.String getSolvent_model_param_ksol()
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setSolvent_model_param_ksol
public void setSolvent_model_param_ksol(java.lang.String solvent_model_param_ksol)
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getSolvent_model_param_bsol
public java.lang.String getSolvent_model_param_bsol()
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setSolvent_model_param_bsol
public void setSolvent_model_param_bsol(java.lang.String solvent_model_param_bsol)
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getPdbx_ls_cross_valid_method
public java.lang.String getPdbx_ls_cross_valid_method()
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setPdbx_ls_cross_valid_method
public void setPdbx_ls_cross_valid_method(java.lang.String pdbx_ls_cross_valid_method)
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getDetails
public java.lang.String getDetails()
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setDetails
public void setDetails(java.lang.String details)
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getPdbx_starting_model
public java.lang.String getPdbx_starting_model()
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setPdbx_starting_model
public void setPdbx_starting_model(java.lang.String pdbx_starting_model)
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getPdbx_method_to_determine_struct
public java.lang.String getPdbx_method_to_determine_struct()
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setPdbx_method_to_determine_struct
public void setPdbx_method_to_determine_struct(java.lang.String pdbx_method_to_determine_struct)
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getPdbx_isotropic_thermal_model
public java.lang.String getPdbx_isotropic_thermal_model()
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setPdbx_isotropic_thermal_model
public void setPdbx_isotropic_thermal_model(java.lang.String pdbx_isotropic_thermal_model)
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getPdbx_stereochemistry_target_values
public java.lang.String getPdbx_stereochemistry_target_values()
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setPdbx_stereochemistry_target_values
public void setPdbx_stereochemistry_target_values(java.lang.String pdbx_stereochemistry_target_values)
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getPdbx_stereochem_target_val_spec_case
public java.lang.String getPdbx_stereochem_target_val_spec_case()
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setPdbx_stereochem_target_val_spec_case
public void setPdbx_stereochem_target_val_spec_case(java.lang.String pdbx_stereochem_target_val_spec_case)
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getPdbx_R_Free_selection_details
public java.lang.String getPdbx_R_Free_selection_details()
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setPdbx_R_Free_selection_details
public void setPdbx_R_Free_selection_details(java.lang.String pdbx_R_Free_selection_details)
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getPdbx_overall_ESU_R
public java.lang.String getPdbx_overall_ESU_R()
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setPdbx_overall_ESU_R
public void setPdbx_overall_ESU_R(java.lang.String pdbx_overall_ESU_R)
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getPdbx_overall_ESU_R_Free
public java.lang.String getPdbx_overall_ESU_R_Free()
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setPdbx_overall_ESU_R_Free
public void setPdbx_overall_ESU_R_Free(java.lang.String pdbx_overall_ESU_R_Free)
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getOverall_SU_ML
public java.lang.String getOverall_SU_ML()
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setOverall_SU_ML
public void setOverall_SU_ML(java.lang.String overall_SU_ML)
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getOverall_SU_B
public java.lang.String getOverall_SU_B()
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setOverall_SU_B
public void setOverall_SU_B(java.lang.String overall_SU_B)
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getPdbx_refine_id
public java.lang.String getPdbx_refine_id()
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setPdbx_refine_id
public void setPdbx_refine_id(java.lang.String pdbx_refine_id)
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getLs_redundancy_reflns_obs
public java.lang.String getLs_redundancy_reflns_obs()
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setLs_redundancy_reflns_obs
public void setLs_redundancy_reflns_obs(java.lang.String ls_redundancy_reflns_obs)
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getPdbx_overall_phase_error
public java.lang.String getPdbx_overall_phase_error()
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setPdbx_overall_phase_error
public void setPdbx_overall_phase_error(java.lang.String pdbx_overall_phase_error)
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getB_iso_min
public java.lang.String getB_iso_min()
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setB_iso_min
public void setB_iso_min(java.lang.String b_iso_min)
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getB_iso_max
public java.lang.String getB_iso_max()
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setB_iso_max
public void setB_iso_max(java.lang.String b_iso_max)
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getCorrelation_coeff_Fo_to_Fc
public java.lang.String getCorrelation_coeff_Fo_to_Fc()
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setCorrelation_coeff_Fo_to_Fc
public void setCorrelation_coeff_Fo_to_Fc(java.lang.String correlation_coeff_Fo_to_Fc)
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getCorrelation_coeff_Fo_to_Fc_free
public java.lang.String getCorrelation_coeff_Fo_to_Fc_free()
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setCorrelation_coeff_Fo_to_Fc_free
public void setCorrelation_coeff_Fo_to_Fc_free(java.lang.String correlation_coeff_Fo_to_Fc_free)
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getPdbx_solvent_vdw_probe_radii
public java.lang.String getPdbx_solvent_vdw_probe_radii()
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setPdbx_solvent_vdw_probe_radii
public void setPdbx_solvent_vdw_probe_radii(java.lang.String pdbx_solvent_vdw_probe_radii)
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getPdbx_solvent_ion_probe_radii
public java.lang.String getPdbx_solvent_ion_probe_radii()
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setPdbx_solvent_ion_probe_radii
public void setPdbx_solvent_ion_probe_radii(java.lang.String pdbx_solvent_ion_probe_radii)
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getPdbx_solvent_shrinkage_radii
public java.lang.String getPdbx_solvent_shrinkage_radii()
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setPdbx_solvent_shrinkage_radii
public void setPdbx_solvent_shrinkage_radii(java.lang.String pdbx_solvent_shrinkage_radii)
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getOverall_SU_R_Cruickshank_DPI
public java.lang.String getOverall_SU_R_Cruickshank_DPI()
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setOverall_SU_R_Cruickshank_DPI
public void setOverall_SU_R_Cruickshank_DPI(java.lang.String overall_SU_R_Cruickshank_DPI)
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getOverall_SU_R_free
public java.lang.String getOverall_SU_R_free()
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setOverall_SU_R_free
public void setOverall_SU_R_free(java.lang.String overall_SU_R_free)
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getLs_wR_factor_R_free
public java.lang.String getLs_wR_factor_R_free()
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setLs_wR_factor_R_free
public void setLs_wR_factor_R_free(java.lang.String ls_wR_factor_R_free)
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getLs_wR_factor_R_work
public java.lang.String getLs_wR_factor_R_work()
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setLs_wR_factor_R_work
public void setLs_wR_factor_R_work(java.lang.String ls_wR_factor_R_work)
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getOverall_FOM_free_R_set
public java.lang.String getOverall_FOM_free_R_set()
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setOverall_FOM_free_R_set
public void setOverall_FOM_free_R_set(java.lang.String overall_FOM_free_R_set)
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getOverall_FOM_work_R_set
public java.lang.String getOverall_FOM_work_R_set()
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setOverall_FOM_work_R_set
public void setOverall_FOM_work_R_set(java.lang.String overall_FOM_work_R_set)
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