Class MSFAlignmentFormat

  • All Implemented Interfaces:
    AlignmentFormat

    public class MSFAlignmentFormat
    extends java.lang.Object
    implements AlignmentFormat
    Author:
    raemig, Thomas Down, Keith James, Nimesh Singh, Mark Schreiber, Matthew Pocock, Bradford Powell
    • Method Summary

      All Methods Static Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      static void main​(java.lang.String[] args)
      used to quick test the code
      Alignment read​(java.io.BufferedReader reader)
      Reads an MSF Alignment File
      void write​(java.io.OutputStream os, Alignment align, int fileType)  
      void writeDna​(java.io.OutputStream os, Alignment align)  
      void writeProtein​(java.io.OutputStream os, Alignment align)  
      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait